Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0102 ATGAGCTTCAAAAGGGAGCTCGATCTTGTCGTATTTGTTTTCTCTGCAGTCTTCTGGTTTGCAGCGACTTTTTATCCAGTCATGTCGGAGCCGATCAAAGACAAGGAAGCTCTGCTTGATTTTCTCAACAAGATGGATCACTCACACTCGCTCAATTGGAAGAAGAGCACTTCTTTGTGCAAAGAATGGATGGGGGTTCAGTGCAACAGAGATGAATCTCGAGTTATAGCTCTGCGATTGGCTGAAGTTGGATTACATGGTTCGATCCCGATCGACACTCTTGGTCGACTATCGGCAATCGAAACTCTAAGCCTTGGATCAAATTACATATCAGGGTCTTTCCCTTCCGACTTCCAAAAGCTGAGAAATCTCAACTCACTCTACTTGCAAAACAACAAGTTTTCTGGTCCATTGCCATTGGATTTCTCAGTATGGAAGAATCTCAACATCATTGATTTGTCAAACAATGCCTTCAATGGGAGCATACCTCGCTCGATTTCGCACACGACGCATCTAACGACTTTAAACCTTGCCAATAACTCACTCTCTGGTGAGATTCCAGACCTCCACCTTCCAAGTTTGCAAGAGCTGGATCTTTCAAACAACAAACTCACAGGCTATGTCCCTCAGTCCCTCAAAAAATTTCCAAGTCAGGCATTCTCCGGTAACAACCTCATGCTCGAAAATGCCGTTCCTCCAGCTCGTCTTAGTCCGTCGCCCAATGCTCAACCGTTGAAGAAAGGCACAACATCACTTGGTGAAGCAGCAATTCTAGGCATTATAATTGGAGGTTCTGCAATGGGATTAGTTATAGCAGCCATCTTGATGGTTATGTTCTGCTCAAACAGAGGAGTTAAAAACAAAGCCTCATCAAAACTGGACAAACAGGAACTCTTTGTGAAGAAAAGGGTGTCTGAGACACAAAGCAACAATCTCAAGTTTTTTCAGAATCAGAACCTTGAGTTCGACTTGGAGGACTTGTTGAGGGCGTCCTCCGAGGTGCTCGGGAAGGGGACGTCCGGGACGACGTATAAGGCGACTTTAGAAGACGGTAATGCCGTTGCGGTGAAGAGGTTGAAGGAAGTGAGCGCTTCAAAGAAGGAATATGAGCAGCAGATGGAGGTGCTTGGGAGCATTGAACATGAAAATGTGTGTGCTTTAAGGGCATATTACTATTCAAAAGATGAGAAACTCATGGTCTTTGACTTCTACCAACATGGAAGTGTCTCTGCAATGTTGCATGTTGCGAGAGAGAAAGGGCAGTCCCCTCTGGACTGGGAAACTCGACTGCGAATCGCCATTGGAGCAGCCAGAGGAATCGCTCACATCCACTCAGAAAACTGCGGCAAACTCGTCCATGGCAACATCAAGGCCTCAAACGTCTTCCTCAACTCCGCCGGCTACGGTTGCGTGTCCGACGCCGGCGTCGCCGCTTTGATGAACCTCATGACCCCGCCGGCCACCAGAGCCGCCGGATACCGCGCTCCCGAACTCAAAGACTCTCGCAAAGCATCTCAAGCCTCCGATACCTACAGCTTCGGCGTCGTGCTTCTCGAGCTCCTCACCGGAAAATTCCCGCTGCATACGAAGGGCGGCGGCGGGGATCAGATCATCCACCTGGTGCGGTGGGTGAACGCGGTGGTCCGAGAGGAGTGGACGGCGGAGGTGTTCGATGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAAATAGCGCTGTCTTGTGTAGGAAGAGTTCCGGATGATCGGCCGGCAATGGCGGAAGTTGCGGCTCGTTTGGAGGGAGTTCGCCGGGTGAGCGGCGGAGGAGACCTACCGGAGCCGCCGCCGCCGCCATTGGAACGCGGAGCGGAGGATTCGATCCAGATTCAGGTGAATATGGCTGAGGGTGAAGGTGGAGATCTGTCGAGATCGAATTGA 1938 50.1 MSFKRELDLVVFVFSAVFWFAATFYPVMSEPIKDKEALLDFLNKMDHSHSLNWKKSTSLCKEWMGVQCNRDESRVIALRLAEVGLHGSIPIDTLGRLSAIETLSLGSNYISGSFPSDFQKLRNLNSLYLQNNKFSGPLPLDFSVWKNLNIIDLSNNAFNGSIPRSISHTTHLTTLNLANNSLSGEIPDLHLPSLQELDLSNNKLTGYVPQSLKKFPSQAFSGNNLMLENAVPPARLSPSPNAQPLKKGTTSLGEAAILGIIIGGSAMGLVIAAILMVMFCSNRGVKNKASSKLDKQELFVKKRVSETQSNNLKFFQNQNLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSASKKEYEQQMEVLGSIEHENVCALRAYYYSKDEKLMVFDFYQHGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIAHIHSENCGKLVHGNIKASNVFLNSAGYGCVSDAGVAALMNLMTPPATRAAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMAEVAARLEGVRRVSGGGDLPEPPPPPLERGAEDSIQIQVNMAEGEGGDLSRSN 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1336120 1340810 + Maker00038677 Lcy12g0102 648165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0102 645 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515(InterPro)
Lcy12g0102 645 MobiDBLite consensus disorder prediction 603 625 - -
Lcy12g0102 645 Pfam Protein kinase domain 332 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0102 645 SUPERFAMILY L domain-like 47 215 - -
Lcy12g0102 645 Gene3D Ribonuclease Inhibitor 33 141 IPR032675 -
Lcy12g0102 645 PANTHER OS05G0588300 PROTEIN 16 609 IPR050994 -
Lcy12g0102 645 FunFam Probable inactive receptor kinase RLK902 31 190 - -
Lcy12g0102 645 PRINTS Leucine-rich repeat signature 172 185 - -
Lcy12g0102 645 PRINTS Leucine-rich repeat signature 191 204 - -
Lcy12g0102 645 Pfam Leucine Rich repeats (2 copies) 170 205 IPR025875 -
Lcy12g0102 645 ProSiteProfiles Protein kinase domain profile. 329 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0102 645 FunFam pollen receptor-like kinase 1 299 403 - -
Lcy12g0102 645 Coils Coil 352 372 - -
Lcy12g0102 645 Pfam Leucine rich repeat 88 134 IPR001611 GO:0005515(InterPro)
Lcy12g0102 645 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 404 608 - -
Lcy12g0102 645 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Lcy12g0102 645 Gene3D Ribonuclease Inhibitor 142 246 IPR032675 -
Lcy12g0102 645 Gene3D Phosphorylase Kinase; domain 1 294 403 - -
Lcy12g0102 645 Gene3D Transferase(Phosphotransferase) domain 1 405 607 - -
Lcy12g0102 645 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Lcy12g0102 645 SUPERFAMILY Protein kinase-like (PK-like) 332 600 IPR011009 -
Lcy12g0102 645 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0102 Lcy-Chr12:1336120 Lcy12g1591 Lcy-Chr12:35990174 1.79E-190 dispersed
Lcy12g0102 Lcy-Chr12:1336120 Lcy6g0106 Lcy-Chr6:993662 7.50E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65485 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0102 - - - 0.0