Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0114 GTTTTTAGGGATTCGGAGGCATTTCGGGACAAACCAGGCGGAACTGGGGCTGCTAGAGGCATCAGGGACAGAGAGGAGGTGACTGAGCTCGACCCGCGCAAGAGGGCTGAATGGGGCCGAGGCCGACCATATGGGGTGAACTCGTTGGCGGTGCGAATGGTGAAATCGGAGCGAGGGCATGATTCTTGGATTGCCTCGGAGGAGGCAGCTCAGACGATCGAGAGAGATGGGCGTGATTCTTCGATGTTGGTTGTGGAGAGTGATGGTGTGCGGCTTTCTGCTTCTCCGTCTCAGCCTTCGAATGATAACGCTCCTGATGGTAAATTGGGGTTTGGAGAACGAGCTGTCTCTGCTGCTGGTGCCGCCTTTTTCTCGGCGATAATTGTAAATCCTCTTGATGTTGCCAAGACAAGGTTGCAAGCTCAAGCTGCAGGAGTTCCTTATTCGCATCCACTTAGTGATTGGACCAGTCGCATGGCATTTTTTGGACCAAAAACGATGTTTGCAGATTTAAGGTGTTCTCCTTCATGTGCACGTGCGGGGATTCATGGTACAGTAGCAATATGTCCTCCTGATTGTTTTCAGTACAAAGGAACGCTGGACGTCTTCTACAAAATCATTCGACAGCTTCTGGAAGGATTTGCGAGGTTGTGGAGAGGCACAAATGCTGGCTTAGCTCTTGCTGTTCCCACGGTGGGAATCTACCTACCTTGCTATGACATATTCCGTAACTGGTTAGAAGAGATCACTACCAAGAATCTTCCTAGTGCTACTCCTTATGTTCCTTTAGTTGCTGGGTCATTGGCGCGTTCTTTGGCTTGTGCAACTTGTTATCCAATTGAGCTTGCTAGAACTCGCATGCAGGCATTTAAGGAGATGCGAATTGGCAAGAAGCCGCCTGGAGTCTGGCAGACTTTACTTGGTGTCGTCTCCAATGTAAAGAGCACAACTAATGGTGAAATTACCTCAGCAAAAAGTTATCGTGCCCTATGGACTGGAATGGGGGCACAGCTTGCACGTGATGTTCCATTCTCAGCAATTTGTTGGTCAACCCTTGAACCAGTCAGAAGGAAACTACTTGGATTGGTAGGTGATGAAGCTAATGCAGCCAGTGTGTTTGGGGCCAACTTTTCTGCTGGTTTTGTTGCTGGAAGTCTTGCTGCTGCCGCTACATGTCCCCTGGATGTTGCAAAAACCCGACGGCAGATAGAGAAGGATCCAGTGAGGGCACTGAGAATGACAACAAGGCAGACACTAATGGAGGTTTGGAGGGATGGTGGGATGAAAGGACTATTTGCAGGAGTTGGACCTCGTGTTGGTCGTGCAGGCCCATCAGTTGGGATTGTGGTATCATTTTACGAAGTTGTGAAATATGTTCTTCATCACCAATATCCAACTTCATGA 1404 49.15 VFRDSEAFRDKPGGTGAARGIRDREEVTELDPRKRAEWGRGRPYGVNSLAVRMVKSERGHDSWIASEEAAQTIERDGRDSSMLVVESDGVRLSASPSQPSNDNAPDGKLGFGERAVSAAGAAFFSAIIVNPLDVAKTRLQAQAAGVPYSHPLSDWTSRMAFFGPKTMFADLRCSPSCARAGIHGTVAICPPDCFQYKGTLDVFYKIIRQLLEGFARLWRGTNAGLALAVPTVGIYLPCYDIFRNWLEEITTKNLPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKEMRIGKKPPGVWQTLLGVVSNVKSTTNGEITSAKSYRALWTGMGAQLARDVPFSAICWSTLEPVRRKLLGLVGDEANAASVFGANFSAGFVAGSLAAAATCPLDVAKTRRQIEKDPVRALRMTTRQTLMEVWRDGGMKGLFAGVGPRVGRAGPSVGIVVSFYEVVKYVLHHQYPTS 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1455598 1462352 + Maker00038973 Lcy12g0114 648177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0114 467 Pfam Mitochondrial carrier protein 197 247 IPR018108 -
Lcy12g0114 467 Pfam Mitochondrial carrier protein 258 359 IPR018108 -
Lcy12g0114 467 Pfam Mitochondrial carrier protein 109 146 IPR018108 -
Lcy12g0114 467 Pfam Mitochondrial carrier protein 373 462 IPR018108 -
Lcy12g0114 467 ProSiteProfiles Solute carrier (Solcar) repeat profile. 257 358 IPR018108 -
Lcy12g0114 467 MobiDBLite consensus disorder prediction 1 42 - -
Lcy12g0114 467 ProSiteProfiles Solute carrier (Solcar) repeat profile. 371 459 IPR018108 -
Lcy12g0114 467 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 245 IPR018108 -
Lcy12g0114 467 Gene3D Mitochondrial carrier domain 91 169 IPR023395 -
Lcy12g0114 467 Gene3D Mitochondrial carrier domain 176 466 IPR023395 -
Lcy12g0114 467 PANTHER FI19922P1-RELATED 96 463 IPR045315 GO:0005739(PANTHER)|GO:0006810(PANTHER)|GO:1990542(InterPro)
Lcy12g0114 467 SUPERFAMILY Mitochondrial carrier 109 455 IPR023395 -
Lcy12g0114 467 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0114 K15119 - - csv:101220455 734.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2021 Lcy-Chr11:43767143 Lcy12g0114 Lcy-Chr12:1455598 1.31E-170 dispersed
Lcy12g0114 Lcy-Chr12:1455598 Lcy6g1632 Lcy-Chr6:29758567 6.70E-15 dispersed
Lcy12g0114 Lcy-Chr12:1455598 Lcy5g1918 Lcy-Chr5:42027001 2.12E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g803 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00223 Cam01g0230 Cec01g0221 Cco01g0231 Clacu01g0225 Cmu01g0218 Cre09g2292 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g00611 . . Lac11g0134 . . Lcy12g0114 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003249 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 11 3 1 49