Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0117 ATGACCGCAGTCTATAATTATAAGTGTTGGGTGTCTTCATCTTTTGGAACATGGAAGCACAATCGTTGGAAAGCTTGCTTGAAAGTATTCCCGACTCTATGTAAAAGCTTACATACTGAAAACTCCAATATTATTTCGACCAATATTTGTATAAGTCGTCATGTAAGAAATGGTCATCTTGATCTTGCTCAAACACTGTTCGATGAAATGCCGATAAGAAGTATTGTCTCGTGGAATATCATGATTTCTGGATACTCCAAATTAGGACAGGTTAATGAAGCTCTGAATCTGGCTTCAGGGATGCATCGCAGTAATGTAAAATTAAATGAGAAAACTTTTTCTACTTTGTTGAGTATTTGTGCCCATTCAGGGTGTACATATGAGGGAAAACAACTTCATTGTTTGGTTTTGAAATGTGGGTTGCAGATTTTTGAGCTTGTGGGAAGTGCATTGTTGTATTTCTATGCGAACATCAGTGACATTTATGGAGCTAAGCTGGTTTTTGATGAGTTGCATGATAAGAATGATTTATTATGGAGCTTGATGCTTGTGGGGTATGTGAAATGCAATTTGATGGATGATGCTTTTGATCTGTTTACAAAAATTCCTGCGCGGGATGTGGTGGCATGGACTACTTTGATATCAGGGTATGCAAGAAGTGAGCACAACTGCAGAAGGGCATTGGAATTATTCCACTCCATGTGGATGAATGGTGAGGTCGAGCCTAATGAGTTCACTTTTGATTGTGTTGTGAGAGCTTGTGGGAGATTAAGAGATTTGAGTCATGGGAAGGTTGTTCATGGGATTTTGACTAAATATGGATTCCACTTCGATCATTCAATTTGTGGTGCTCTGATTTTATTTTACTGTCAGTGTGAAGCTATTGACAATGCCAAGACAGTTTATGATAGCATGGAGAGACCATGTTTAAATGCTTCAAATGCTCTTCTGGAGGGGCTGATACTAGCGGGAAGAATTAATGATGCTGAGGAAAATTTTGACAAATTAAGAGAAAAGAATCCAGTTTCATACAATTTGATGCTTAAAGGGTATGCAATTAGTGGTAGGATTGAAGAATCAAAGAAACTATTTGAAAGAATGACTCATAAAACTATAATTTCATCAAACACTATGATATCTGTGTATGCTAGGAATGGTGAAATTGAAAAAGCTTTGAAATTATTTGAGTCAGTGAAAGGTGAAGGAAATCCTGTGACATGGAATTCAATGATATCAGGCTATATTCAAAATCATCAGCATGAAGAAGCTTTGAAACTCTATCAAACAATGTGCAGAACATCAGTTGAGCGCTCTAGATCAACATTCTCTGCTCTGCTTCAAGCTTGCACATGCCTCGGATCTATTCAATTTGGTCGATCACTTCATGGCCATGCAATCAAGACAGCCTTTGACTCTAATGTTTATGTTGGAACATCACTTATAGATATGTACTCAAAATGTGGGAGCATCTATGATGCTAAAACCTCATTTGCCAGTGTTTATTCCCCTAATGTAGCAGCTTTTACCGCTCTAATTAATGGATATGTGCAGCATGGGCTTGGAGTCGAAGCATTCTTAGTCTTTGAGAACATGTTAAAGCACAAAGTTGTGCCAAATGCAGCCACACTTTTGGGGATTCTTTCTGCATGCAGTCGTGCTGGTATGGTAAATGAAGGAATGGCAATTTTCCACTCTATGGAAAAATATTATGGTGTGATTCCAACTTTAGAACACTATGCATGTGTGGTGGATCTTCTTGGTCGTTCGGGACGTCTGTATGAAGCTGAAGAATTTATCAGAAACATGCCAATTGAAGCTGATGGGGTTATTTGGGGAGCTCTGCTAAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGTGAGAGTGTGGCTAAGAAGATGCTTAGTTTGAACCCCAAAGCAATATCTGCTTATGTTATTCTGTCTAATATATATGCTATATTAGGGAAGTGGGTAGATAAGATCAATGTGAGGAGGCGATTGAGGAGCTTAAAAGTGAAAAAGGATCGTGGTTGTAGTTGGATCGACGTAAATAATAGAACTCATATTTTCTCTGTAGAAGATAGGTCCCATCCTAACTGTAATGCTATTTATGCAACGTTGGAGCATCTGTTAGCAAATGTGAACTCTATAGCTCAATTCGACTATGTTACCAAATCAGTTTTGGATGTTCATGTATGA 2202 38.24 MTAVYNYKCWVSSSFGTWKHNRWKACLKVFPTLCKSLHTENSNIISTNICISRHVRNGHLDLAQTLFDEMPIRSIVSWNIMISGYSKLGQVNEALNLASGMHRSNVKLNEKTFSTLLSICAHSGCTYEGKQLHCLVLKCGLQIFELVGSALLYFYANISDIYGAKLVFDELHDKNDLLWSLMLVGYVKCNLMDDAFDLFTKIPARDVVAWTTLISGYARSEHNCRRALELFHSMWMNGEVEPNEFTFDCVVRACGRLRDLSHGKVVHGILTKYGFHFDHSICGALILFYCQCEAIDNAKTVYDSMERPCLNASNALLEGLILAGRINDAEENFDKLREKNPVSYNLMLKGYAISGRIEESKKLFERMTHKTIISSNTMISVYARNGEIEKALKLFESVKGEGNPVTWNSMISGYIQNHQHEEALKLYQTMCRTSVERSRSTFSALLQACTCLGSIQFGRSLHGHAIKTAFDSNVYVGTSLIDMYSKCGSIYDAKTSFASVYSPNVAAFTALINGYVQHGLGVEAFLVFENMLKHKVVPNAATLLGILSACSRAGMVNEGMAIFHSMEKYYGVIPTLEHYACVVDLLGRSGRLYEAEEFIRNMPIEADGVIWGALLNACWFWMDLELGESVAKKMLSLNPKAISAYVILSNIYAILGKWVDKINVRRRLRSLKVKKDRGCSWIDVNNRTHIFSVEDRSHPNCNAIYATLEHLLANVNSIAQFDYVTKSVLDVHV 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1482934 1485135 - Maker00038424 Lcy12g0117 648180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0117 733 Pfam PPR repeat family 205 255 IPR002885 -
Lcy12g0117 733 Pfam PPR repeat family 503 551 IPR002885 -
Lcy12g0117 733 Pfam PPR repeat family 403 449 IPR002885 -
Lcy12g0117 733 Pfam PPR repeat family 74 121 IPR002885 -
Lcy12g0117 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Lcy12g0117 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 241 IPR002885 -
Lcy12g0117 733 Pfam E motif 623 683 IPR046848 -
Lcy12g0117 733 Gene3D Tetratricopeptide repeat domain 372 459 IPR011990 GO:0005515(InterPro)
Lcy12g0117 733 Gene3D Tetratricopeptide repeat domain 501 709 IPR011990 GO:0005515(InterPro)
Lcy12g0117 733 NCBIfam pentatricopeptide repeat 405 436 IPR002885 -
Lcy12g0117 733 NCBIfam pentatricopeptide repeat 76 110 IPR002885 -
Lcy12g0117 733 NCBIfam pentatricopeptide repeat 376 402 IPR002885 -
Lcy12g0117 733 NCBIfam pentatricopeptide repeat 342 368 IPR002885 -
Lcy12g0117 733 NCBIfam pentatricopeptide repeat 546 575 IPR002885 -
Lcy12g0117 733 NCBIfam pentatricopeptide repeat 507 540 IPR002885 -
Lcy12g0117 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Lcy12g0117 733 Gene3D Tetratricopeptide repeat domain 277 371 IPR011990 GO:0005515(InterPro)
Lcy12g0117 733 Gene3D Tetratricopeptide repeat domain 139 261 IPR011990 GO:0005515(InterPro)
Lcy12g0117 733 Gene3D Tetratricopeptide repeat domain 16 134 IPR011990 GO:0005515(InterPro)
Lcy12g0117 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Lcy12g0117 733 Pfam PPR repeat 342 369 IPR002885 -
Lcy12g0117 733 Pfam PPR repeat 47 71 IPR002885 -
Lcy12g0117 733 Pfam PPR repeat 374 402 IPR002885 -
Lcy12g0117 733 Pfam PPR repeat 179 203 IPR002885 -
Lcy12g0117 733 SUPERFAMILY HCP-like 309 437 - -
Lcy12g0117 733 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 33 131 - -
Lcy12g0117 733 FunFam Pentatricopeptide repeat-containing protein At3g13880 477 725 - -
Lcy12g0117 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0117 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0117 Lcy-Chr12:1482934 Lcy10g2089 Lcy-Chr10:44970340 4.41E-97 dispersed
Lcy12g0117 Lcy-Chr12:1482934 Lcy8g0123 Lcy-Chr8:2992466 5.21E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36