Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0122 ATGGAGTGCAACAAAGATGAGGCAGTTAGAGCGAAAGAAATTGCTGAGAGAAAATTTACAGAGAGAAATTATTCTGCTGCAAAGAAGTTTGTTTTGAAGGCTCAAAATTTGTACCCTGGGCTTGATGGTCTCTCTCAAATGATGACAACTCTCGAAGTGTATATCTCTGCAGAGAATAAGATAAATGGGGAAATGGATTGGTATGGAATACTTGGTGTGAACCACTTAGCTGATGATGAGACTATTAGGAGACAATATAGAAAGCTGGCTCTTGTCCTCCATCCTGATAAAAACAAGTCACTTGGTGCAGAGGGTGCATTTAAATTGGTTTCAGAGGCCTGGAGTTTGTTATCTGACAAGGCAAAGAGACTGGCTTATAATCAGAAGAGGGATTTGAAAGGGGGTCGACAGAAAACTCCTACTCACACTCATAGTACTTCAGTGCCACCAAGTGCAAATGGCTTTCAAAATTTTAATAATGTTGCTTCAAATGCAAGAAACGTTCAAAGTAAGGTCCGGGTAGGGGCCACCTCATTTCAGCCTTCTCATAGAAAACCAGATACTTTTTGGACTCTTTGCAATCGATGCAAGACACATTACGAGTACCTTAGAGTCTATCTAAATCACACTCTCCTCTGCCCTAATTGTCATGAAGCTTTTTTGGCTGTAGAGAAGGCTCCACCTCCAAATGTATTCAAGTCACCTAGTTGGTCTTCTCAGCAGCAACATCAAAACTCTAGACAGCATAATGTTAGTGGGAATGTGTATGGTACTGCAAGAAACACTAAAAATCCTGATTCTGGGCATTCTGTGGGTGTTAATTCAGTTGATAATACAAACTTTCAGTGGGGTCCTTCCTCCAGGACAGCTGGTGTTAGTAGCACCTTTTCATCAGCTTCCGCTCAAGCTGCAAATTTGGTTCAACAAGCAAGTGAGAAAGTGAAGAGAGATCGTGATGAAACACAGCCATCGACTGAAGTGGAGAGGAGTCATTTACCTTCTTCAAAAAAGAAAAGAACTGATGGAATTAACAGCTATGGGGTCCACGTGGCAAATCAAATGGCCAGAGGAGATGGATCAGCTGGTGTTGGCTTACCTGAATTGAGGAAGATTTATCCTGATACTCAAAAGTTTCATGGTTTTTATGGTGCATTTAACAGGAACAATAGCCAGAGAGAGTTGTCAATCTTTGAAATTCGAAACATGCTAATGGACAAGGCTCGAGCTGAAATTCGCAAGAAACTTAAAGAGTGGAGCTCAATGACTGAAAAATCAACTATGAATAAACAGTCCAAGAAGCAAAAGAATGTGGTGAATGATGGAACTCATGATATAAAAATTAATGGTAAATCTTCTGCAAATAGTAAAGGATGTCATGAGAGGAAGCCTGAGTCAGGTTCTTTAGCTGGTAAAAATACAGGCACTGAGAACGATCCTATCTCAATTAATGTTCCAGATCCTGATTTTCATAATTTTGACTTGGACCGAGCCGAAAGTTCGTTCGGGGATGATCAAGTCTGGGCTTGTTATGATGATGATGATGGAATGCCTCGTTTCTATGCTCGAATTCACAAGGTGATTTCCCTAAGACCATTTAGAATGCGTATCAGTTGGCTCAATTCAAGAAGCAATACTGAGATTGGCCCTATGGACTGGATAGGTTCAGGGTTCACAAAAACCTGTGGGGATTTCAGAATTGGAAGACATGAAGTTACGAGATCCTTAAACTCCTTCTCACATAAGGTTTGCTGGGTGAAAGGTTTACGAGGGGTGATACGGATATTTCCTCAAAAGGGTGAAGTTTGGGCTCTTTACAGAAACTGGTCTGCGGATTGGAATAAAGATACTTCAGAAGAAATTATACACAAGTACGATATGGTAGAAGTGCTCGATGATTTTAATGAAGAACAAGGCGTGTCTGTTGCTCCTCTTGTAAAGGTTGCTGGTTTCAGGACAGTGTTTCGTAGACACATGGATGCAAAAGAAGTGAGGAAGGTCCCTAAAGAAGAGATGTTCCGCTTCTCCCATCAGGTCCCCAATTACTTACTTACGGGAGAAGAAGCTCAGAATGCTCCAAAGGGTTGTCGGGAATTGGATCCAGCAGCAACACCTTTGGAGCTCCTCCAGATTGATACAGAATATAATCAGGCAACAACGGAGGAGACTGAGGTAAAAACTGAAGAAGAGATATCTCATATTAACCAGGAAACTTTAGTTAATGAGGAAGCTGGTATGGCAGATGATGCCAACAAAAGTAAATCAACTAAATGTGGAGATTGCTCGAGGATCATAGCTATTGGTATTGCTACCAGAAAGAGCAATGATATGGGCATCTTAGATCTTTATGCATTTGTTGTATGTGATGGTGCTGTGGGAGTTCTTTCTTGCTCTACACCATATGATATGCAATTATTCATTCAGGATGCTTTACTTGTCCATTTTATGGCTCTAGATATAAGACAGTTTGGTTCCAGGCTCACCTCAACGATTAGGAATGGCGGCAATCGGCACGATGGGGCTGAAGCACAGTGGAACAACGACGAGGCTGAAGCACGACGGAGATGGCGGCGGCGCGACACGACGAAGTGGGACAACAACAGCACAAAGAAGAAATTGAACCAAAAGGGAGAAAGAAAGTCGATGGTGGCGGCGTGGCACGATGGAGTGGAGAGAGGATTCACGAGGGAGAAGAAGGTGAGGTGGCGGCGGATTCACGACGAAGAAGAAGGCGATGGGCGGCGGCGTGGCGCTCAACAGTGGTCTTTTGGGGAGTAG 2775 42.81 MECNKDEAVRAKEIAERKFTERNYSAAKKFVLKAQNLYPGLDGLSQMMTTLEVYISAENKINGEMDWYGILGVNHLADDETIRRQYRKLALVLHPDKNKSLGAEGAFKLVSEAWSLLSDKAKRLAYNQKRDLKGGRQKTPTHTHSTSVPPSANGFQNFNNVASNARNVQSKVRVGATSFQPSHRKPDTFWTLCNRCKTHYEYLRVYLNHTLLCPNCHEAFLAVEKAPPPNVFKSPSWSSQQQHQNSRQHNVSGNVYGTARNTKNPDSGHSVGVNSVDNTNFQWGPSSRTAGVSSTFSSASAQAANLVQQASEKVKRDRDETQPSTEVERSHLPSSKKKRTDGINSYGVHVANQMARGDGSAGVGLPELRKIYPDTQKFHGFYGAFNRNNSQRELSIFEIRNMLMDKARAEIRKKLKEWSSMTEKSTMNKQSKKQKNVVNDGTHDIKINGKSSANSKGCHERKPESGSLAGKNTGTENDPISINVPDPDFHNFDLDRAESSFGDDQVWACYDDDDGMPRFYARIHKVISLRPFRMRISWLNSRSNTEIGPMDWIGSGFTKTCGDFRIGRHEVTRSLNSFSHKVCWVKGLRGVIRIFPQKGEVWALYRNWSADWNKDTSEEIIHKYDMVEVLDDFNEEQGVSVAPLVKVAGFRTVFRRHMDAKEVRKVPKEEMFRFSHQVPNYLLTGEEAQNAPKGCRELDPAATPLELLQIDTEYNQATTEETEVKTEEEISHINQETLVNEEAGMADDANKSKSTKCGDCSRIIAIGIATRKSNDMGILDLYAFVVCDGAVGVLSCSTPYDMQLFIQDALLVHFMALDIRQFGSRLTSTIRNGGNRHDGAEAQWNNDEAEARRRWRRRDTTKWDNNSTKKKLNQKGERKSMVAAWHDGVERGFTREKKVRWRRIHDEEEGDGRRRGAQQWSFGE 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1529931 1536544 - Maker00038764 Lcy12g0122 648185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0122 924 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 421 435 - -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 231 342 - -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 418 482 - -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 232 309 - -
Lcy12g0122 924 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Lcy12g0122 924 PRINTS DnaJ domain signature 102 122 IPR001623 -
Lcy12g0122 924 PRINTS DnaJ domain signature 68 86 IPR001623 -
Lcy12g0122 924 PRINTS DnaJ domain signature 86 101 IPR001623 -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 139 154 - -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 130 154 - -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 904 924 - -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 841 879 - -
Lcy12g0122 924 Pfam DnaJ domain 66 127 IPR001623 -
Lcy12g0122 924 Gene3D DnaJ domain 63 175 IPR036869 -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 833 879 - -
Lcy12g0122 924 CDD DnaJ 66 119 IPR001623 -
Lcy12g0122 924 PANTHER BNAC03G44070D PROTEIN 1 703 - -
Lcy12g0122 924 MobiDBLite consensus disorder prediction 311 338 - -
Lcy12g0122 924 Pfam Domain of unknown function (DUF3444) 481 687 IPR024593 -
Lcy12g0122 924 SMART dnaj_3 65 122 IPR001623 -
Lcy12g0122 924 SUPERFAMILY Chaperone J-domain 57 126 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0122 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1050 Lcy-Chr11:31800212 Lcy12g0122 Lcy-Chr12:1529931 1.77E-213 dispersed
Lcy12g0122 Lcy-Chr12:1529931 Lcy2g0054 Lcy-Chr2:384957 3.33E-206 dispersed
Lcy12g0122 Lcy-Chr12:1529931 Lcy7g0238 Lcy-Chr7:2067742 6.02E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g875 . . . . . . . . . . . . Car02g00917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g00624 . . Lac11g0143 Hepe06g0780 . Lcy12g0122 . . . . . . . . . . Cme09g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003895 2 1 3 3 3 1 2 1 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45