Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0123 ATGCCCCTTTTTGGAATGTTAGGAAGGTTGTGTTCAACTTTACCATACAGTGGACTCTCTTACTTGAAGTTCTCTAACTGTTTTCCCCTCTTTTTCAGGAGTTCCCTCAAGAAAGGCGTGTCAACCAAAGAAGTATTTGGACTGTATGACATTACAATTCAGATAGTTATCATGACTTATCTGCAGGAGAAGTTTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGACAACACTTTAAATACTGGAAAGAATGGGACAAGAGCTGACTTAGTTTCAGAAAAGCCTCTCAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATAAAGAAATCCTTGAAGTCGTCTTCTTTCAATAAGTTTATGTCCAGAGGTTTTGGAACCGGAAAAAAAGTACTTGACCCACAGGGGCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCTGTTTCATTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGATGAGAAGAAATGTCTTGGGTTGGACAAGAAGATGGAGATTACAGCCAGTGTATTACGTTCATTCACTGACATATTTTATATATTGCATATTGTTTTTCAATTCCGTACGGGATTTATCGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGCAATTGCAAAGAGATATCTGTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAATTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACTAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAATATGTACCAAGGTTCATTAGAATCTATCCTTTATATAAAGAAGTTACAAGAACATCGGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCATTTTGGTACTTGTTTTCTATAGAGCGGGAAACTACATGCTGGCAGAGGGCTTGTCATAATCATACTGGCTGTGTTTCTAATTCACTATATTGTGATGTCAGTCCTGGAAACAACGCATTTTTAAATACTTCATGTCCTACAGTTGGTGGAGACAACCCACCTTTTGATTTTGGAATATTTCTTGATGCTCTTAAGTCTGGTGTTGTGGAGTCGATGGATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGGCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTATGGGAAATTTGCTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAGATGAGGGTTAGAAGAAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAACAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATTTGGTTCGAAATCTTCCAAAAGATCTCAGAAGGGACATAAAACGCCATCTTTGTTTGTCTCTGCTCATGAGGGTACCGATATTTGAAAAAATGGACGAACAATTGTTGGATGCTATGTGTGACCGTCTCAAGCCAGTACTATACACAGAAGAAAGTTACATCGTTAGGGAAGGAGACCCGGTAGACGAGATGATCTTCATTATGCGAGGCAAGTTATTGTCTGTAACTACAAATGGTGGAAGAACCGGTTTCTTTAATTCTGAACACCTCAAGGCAGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCGACAAGAACCGTGCGAACTCTTTCAGAAGTTGAAGCATTTGCTTTAAAGGCAGATGACTTGAAGTTTGTAGCCTCACAGTTCCGACGGCTTCACAGCAAGCAGCTACGGCACACTTTCAGGTTCTATTCACAGCAATGGAGAACATGGGCAGCGTGTTTCATACAAGCAGCATGGCGTCGATACAGAAGAAAGAAGCATGAACAGGCCCTCTTGGAAGAAGAGAACAGATTAAAAGATGCATTGGCCAAGACAGGTGGGAATTCTCCTAGTTTAGGTGCCACCATCTACGCATCCAGATTTGCAGCTAACATCCTTAGAACGATTCGACGCACAAGCTCGCGGAAGGCCAGGATTCCAGAGAGAATACCGCCCCTGTTGCTTCAGAAACCAGCAGAGCCTGATTTTACCTCTGAAGAGAATAGTTGA 2310 41.56 MPLFGMLGRLCSTLPYSGLSYLKFSNCFPLFFRSSLKKGVSTKEVFGLYDITIQIVIMTYLQEKFVRFQDWSSDKTSRGLYSADNTLNTGKNGTRADLVSEKPLKELETGSYRINRIKKSLKSSSFNKFMSRGFGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDEKKCLGLDKKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQRACHNHTGCVSNSLYCDVSPGNNAFLNTSCPTVGGDNPPFDFGIFLDALKSGVVESMDFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQALLEEENRLKDALAKTGGNSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPLLLQKPAEPDFTSEENS 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1551768 1558677 + Maker00038528 Lcy12g0123 648186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0123 769 Gene3D Helix hairpin bin 465 530 - -
Lcy12g0123 769 FunFam Cyclic nucleotide-gated ion channel 1 537 655 - -
Lcy12g0123 769 SUPERFAMILY cAMP-binding domain-like 468 661 IPR018490 -
Lcy12g0123 769 CDD CAP_ED 539 670 IPR000595 -
Lcy12g0123 769 Pfam Cyclic nucleotide-binding domain 560 651 IPR000595 -
Lcy12g0123 769 ProSiteProfiles cAMP/cGMP binding motif profile. 539 623 IPR000595 -
Lcy12g0123 769 FunFam Cyclic nucleotide-gated ion channel 1 466 530 - -
Lcy12g0123 769 Coils Coil 691 711 - -
Lcy12g0123 769 Gene3D Jelly Rolls 537 657 IPR014710 -
Lcy12g0123 769 SUPERFAMILY Voltage-gated potassium channels 142 461 - -
Lcy12g0123 769 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 77 742 - -
Lcy12g0123 769 SMART cnmp_10 539 670 IPR000595 -
Lcy12g0123 769 Gene3D - 153 463 - -
Lcy12g0123 769 Pfam Ion transport protein 153 466 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0315 Lcy-Chr10:5737793 Lcy12g0123 Lcy-Chr12:1551768 1.21E-263 dispersed
Lcy11g2044 Lcy-Chr11:44087349 Lcy12g0123 Lcy-Chr12:1551768 3.91E-239 dispersed
Lcy12g0123 Lcy-Chr12:1551768 Lcy8g1911 Lcy-Chr8:45376747 2.46E-233 dispersed
Lcy11g2043 Lcy-Chr11:44079285 Lcy12g0123 Lcy-Chr12:1551768 1.68E-196 wgd
Lcy12g0123 Lcy-Chr12:1551768 Lcy6g0084 Lcy-Chr6:798092 1.11E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0123 K05391 - csv:101221781 1352.42