Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0128 ATGTATGCTGAAACTGAGCATTTGCTTCCTTATTTCCAAAATTACTCTGAATTAGCAAAGGATTTCTGCAAAACCCACAAGCTTGATTCTCCATTGAGCAACATGGTTCAGACATCAACTGTATGTGAATACAACATGGGCGGCGAAGGCGACCTATTCAAAGCTCCAGAGCCGATCATCGAGGAATCGTTTTCGGGTCTCAATCCTATGATGGCTGCAATTTCAATGCTTTCCTGTGGCAACGCCAACATTTCCTTGGAGGGACTTAAAGATGCAGATTTTCTTTTGGGTTCAAAAGGTGCAGATTTACTTCAAAATGATCAGCTCTTGAGTGAGGTTTACTATGAGTGTGAGAAGGAACTCTTAGAGAAAGGAGCAATGCAAACGCCGCTGTCTGAAGTTCTCGATCTTGAAAATCAGACTTCGAAGACAGACGAATGCCAAATTCCAGAAAACAAATCAGTTTCCGATGCAACACTTCAGAAGAGTGTTAGCTCAGGATGCTTAAGGTCAATGGACTGGATGCAAGGCCCTCCAATGAAGTCCAGTCTTTTGGATTTTAGCGGAATGGATATGAATGAGGTCTATGGGATGCGGCGGGCGTTTAGCGAAGGCGATATCAAGACTCTTAGTAATGGCAATGGGAGCCAGTTTCATTCTCCTCTCGAGCGGCCGCTGCTAGTCAGCAATTGCACTGCAGAAGAACGCAAAGAAAAGCTCTCGAGATATCGAAATAAGAAGACGAAAAGGAACTTTGGCAGAAAGATCAAGTATGCTTGCAGAAAGGCTCTGGCTGACAGTCAACCAAGAATCAGAGGAAGGTTTGCCAAGACTGAAGAATCTGAGATGAAGAGGCAATAA 861 44.02 MYAETEHLLPYFQNYSELAKDFCKTHKLDSPLSNMVQTSTVCEYNMGGEGDLFKAPEPIIEESFSGLNPMMAAISMLSCGNANISLEGLKDADFLLGSKGADLLQNDQLLSEVYYECEKELLEKGAMQTPLSEVLDLENQTSKTDECQIPENKSVSDATLQKSVSSGCLRSMDWMQGPPMKSSLLDFSGMDMNEVYGMRRAFSEGDIKTLSNGNGSQFHSPLERPLLVSNCTAEERKEKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEESEMKRQ 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1595491 1598578 - Maker00038651 Lcy12g0128 648191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0128 286 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 113 281 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lcy12g0128 286 Pfam CCT motif 236 278 IPR010402 GO:0005515(InterPro)
Lcy12g0128 286 ProSiteProfiles CCT domain profile. 236 278 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0128 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0128 Lcy-Chr12:1595491 Lcy12g1629 Lcy-Chr12:36608515 8.69E-18 dispersed
Lcy12g0128 Lcy-Chr12:1595491 Lcy6g0073 Lcy-Chr6:684740 4.04E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g913 . . . . Bpe03g00187 . . . . . . . . . Sed01g3497 Cpe05g00603 Cpe14g00043 Bhi01g01482 Tan01g0109 Cmetu06g0712 . . Mch10g0065 . . . . . . . . . . . . . . Chy09g01435 Cme06g01134 . . . . . . . . . . . . . . . Cpe09g00029 Cpe13g00312 Bhi12g00631 . . Lac11g0150 Hepe06g0788 . Lcy12g0128 . . . . . . . . . . Cme09g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001051 2 2 3 3 2 2 4 2 2 1 2 2 4 2 2 3 2 4 4 2 2 2 2 2 2 2 2 8 8 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19210 None None None None Lcy TR