Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0130 ATGGCGATTATCTCTGAGTACGAAGAGGAAGAAATCCCAAAGCCGAAGAAGCCTTCCCACTCCTCGTCTTCATCATCGTCTTCATCGGCCAAGTCCTCTCAGTTCAATGCCAACTTCGATCCTTCAAACCCTCTAGGGTTTTTGGAGAAGGTGTTCGATTTTCTTGCCAATGAGAGCGATTTTCTATCCAGAGATAGAGTCGAGAAGGAAATTGAGACGGTAGTGCGCAGAGCTGTGGAGAAGAGGAAGAAGCATGAGGAGTCTCTTGAGCAGAAGGGAAAGGCCGAGAAGAGGATCAAGGAGGAGGTGAGGAGTGTGAAGCAGGAAGCTGCGCCGGTGACTGTAAAGCAGGAGGTGAAGGCTGTGAAGGAGGAGCCGAGGACCGTGGCATCACCGCCAGAACAGAAGGTGGATGTGAAGTTGGAGGAAAACATCGAGGAGAAGAAAGAAGAGAATGGTCCTAGAGTTCCCAACAAAGGTAATGGCCTTGATATGGACAACTACTCTTGGACACAGACCCTCCAGGAAGTCACCGTTAATGTACCAGTGCCCAAAGGAACTAAGTCGAGGTTTGTGGTATGTGAGATCAAGAAGAATCATCTCAAAGTTGGACTAAAGGGTCAACCACCAGTGATAGATGCAGACCTTTGTCAGATTGTCAAGCCAGATGATTGTTATTGGAGCATAGAGGATCAGAGCATCGTCTCTATTCTTTTGACCAAGCACAACCAAATGGAGTGGTGGAAGTATTTAGTGAAAGGTGATCCTGAGATCGATACTCAGAAGGTTGAACCAGAGAACAGTAAACTGTCTGATTTGGATCCAGAAACACGGCAAACAGTTGAAAAGATGATGTATGGTTGCAAAAAGAATTTGAAGCTCACACCAGAAGGATACATCATATTTTGCTATGCCATCATCTCCTCCCAGTAG 933 46.52 MAIISEYEEEEIPKPKKPSHSSSSSSSSSAKSSQFNANFDPSNPLGFLEKVFDFLANESDFLSRDRVEKEIETVVRRAVEKRKKHEESLEQKGKAEKRIKEEVRSVKQEAAPVTVKQEVKAVKEEPRTVASPPEQKVDVKLEENIEEKKEENGPRVPNKGNGLDMDNYSWTQTLQEVTVNVPVPKGTKSRFVVCEIKKNHLKVGLKGQPPVIDADLCQIVKPDDCYWSIEDQSIVSILLTKHNQMEWWKYLVKGDPEIDTQKVEPENSKLSDLDPETRQTVEKMMYGCKKNLKLTPEGYIIFCYAIISSQ 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1620179 1624316 - Maker00038697 Lcy12g0130 648193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0130 310 CDD p23_NUDC_like 168 252 - -
Lcy12g0130 310 Coils Coil 64 84 - -
Lcy12g0130 310 FunFam Nuclear migration protein nudC 159 286 - -
Lcy12g0130 310 ProSiteProfiles CS domain profile. 163 252 IPR007052 -
Lcy12g0130 310 Gene3D - 159 287 IPR008978 -
Lcy12g0130 310 Pfam CS domain 167 241 IPR007052 -
Lcy12g0130 310 MobiDBLite consensus disorder prediction 1 39 - -
Lcy12g0130 310 MobiDBLite consensus disorder prediction 18 39 - -
Lcy12g0130 310 PANTHER NUCLEAR MOVEMENT PROTEIN NUDC 32 287 IPR037898 GO:0005737(PANTHER)|GO:0006457(PANTHER)|GO:0051082(PANTHER)
Lcy12g0130 310 SUPERFAMILY HSP20-like chaperones 153 267 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0130 K25866 - - csv:101222013 436.802
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g914 . . . . . . . . . . . . . . . Cpe05g00602 . . . . . . . . . . . . . . . . . . . . . Chy09g01436 . . . . . . Bpe12g00353 . . . . . . . . . . Cpe13g00313 Bhi12g00632 . . Lac11g0151 Hepe06g0789 . Lcy12g0130 . . . . . . . Lsi09g00024 . . Cme09g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006262 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38