Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0133 ATGCACTTTCCCACCATGAATAACTACAACAAGCTCCACTCCGACCAAACTCCGTCCAATCCTCCGCCTCCACCTCCGCCCTCCTCCTCCTCCCGCCGCCGCCGAATCCTCTTCATCTCCCTCCTCTCCATCCTCCTCATCGTCGCCTCCGCCGTCTCCGCTGCCGTCCTCGTCCACTCCCACATCACCTCCTCCTCCCAACCCCATTTCCCCCACAACAAACCCACCCAAGCCATCTCCCGCGCCTGCAGCCTCACCCTCTACCCTTCTCTCTGCCTCTCCTCCCTCCTCGCCTTCCCCGGCGCCCTCTCCGCCGACGTCCACGACCTCGTCCACATCTCCCTCAACCTCACTCTCCAGCACCTCACCAAAGCCCTCTACTCCTCCTCCCAGCTCCCCATCTCCCAATTCTCCGCCGACCCTCTCGCCCTCTCCGCCTATCAAGACTGCATCGAGCTCCTCGGAGACGCCGTCGACGCCTTCTCGCTCTCCCTCTTCTCCGCCTCCGCCTCCAACCACGACGTCGTCACCTGGCTCAGCGCCGCCTTGACCTACCACGACACCTGCACCGATGGCTTTGCGGACGTCGCTGGCCCGGTCAAGGAGCAGATGACGGCTAGGCTGAGTGATTTGTCGGAGATGATCAGTAATTCTTTGGCTATCTTTTCTGGGTTTGGTGGCGGGTTGCCGGTGCAGAACAGGCGCCGTCGGTTGATGGAGAGTGATGCTCAGTGGGCGGCGGAGAATGCGGTGGCGGAGGTGGAGTTTCCCGGCTGGGTCACTGGGAAGGATCGCCGGCTTTTGGCTACTCCCATTTCGGCCATTCAGGCGGATATTGTGGTTGCTAAAGATGGCACTGGGAAGTTCAAGACGGTGGCCGAGGCCATTGCGGCTGCGCCGTCGTCCAGTGGTCGCCGGATCGTCATCTACATTAAGGCTGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTGGGAGATGGGAAGGGCATAACCGTCATTTCAGGTGGCAAAAGCGTTTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCTGGGACAGGTATAATCCTACGAGACATGACGTTCGAGAACACGGCGGGACCAGGGAGGCACCAAGCAGTGGCACTCCGCATCAGCGCGGACCACGCAGTGGTATACCGATGCAACATCATCGGATACCAAGACACTCTCTACGTGCACTCGAACCGCCAGTTCTTTCGAGAGTGCGACATCTATGGAACTGTAGATTTCATATTTGGGAACGCCGTGGTGGTGTTCCAGAGCTGCAACATCTATGCGAGGAAGCCGATGTCGCAGCAAAAGAACACGATCACGGCGCAGGACCGGAAGGATCCGAACCAGAACACCGGAATCTCGATCCACGCCTGCAAGATCCTGGCCACCTCCGACCTGGAAGCCTCCAAGGGCTCTTTCCCGACGTTCCTCGGCCGGCCTTGGAAATTATACTCTAGAGTCGTCTACATGGTATCTTCCATGGGCGATCACATTCATCCACGTGGATGGCTCGAGTGGCAGGGCTCCTTCGCCCTCGACACTCTTTACTACGGCGAGTATATGAATTCCGGGCCGGGCGCCGCCGTCGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTCATAACTTCCACCGTTGAAGCCACCAAATTTACCGTCGGGCAGTTTATTTACGGCTCATCCTGGCTGCCCTCCACTGGCGTGTCGTTTTCTGCTGGATTATCCGCTAACTAA 1782 58.19 MHFPTMNNYNKLHSDQTPSNPPPPPPPSSSSRRRRILFISLLSILLIVASAVSAAVLVHSHITSSSQPHFPHNKPTQAISRACSLTLYPSLCLSSLLAFPGALSADVHDLVHISLNLTLQHLTKALYSSSQLPISQFSADPLALSAYQDCIELLGDAVDAFSLSLFSASASNHDVVTWLSAALTYHDTCTDGFADVAGPVKEQMTARLSDLSEMISNSLAIFSGFGGGLPVQNRRRRLMESDAQWAAENAVAEVEFPGWVTGKDRRLLATPISAIQADIVVAKDGTGKFKTVAEAIAAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSVFDKVTTFRTATFAGSGTGIILRDMTFENTAGPGRHQAVALRISADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMSQQKNTITAQDRKDPNQNTGISIHACKILATSDLEASKGSFPTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEATKFTVGQFIYGSSWLPSTGVSFSAGLSAN 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1659503 1665847 + Maker00039006 Lcy12g0133 648196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0133 593 Pfam Pectinesterase 278 575 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy12g0133 593 MobiDBLite consensus disorder prediction 1 31 - -
Lcy12g0133 593 FunFam Pectinesterase 272 590 - -
Lcy12g0133 593 Gene3D - 272 590 IPR012334 -
Lcy12g0133 593 CDD PMEI-like_3 82 227 - -
Lcy12g0133 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 223 IPR035513 -
Lcy12g0133 593 Pfam Plant invertase/pectin methylesterase inhibitor 78 221 IPR006501 GO:0004857(InterPro)
Lcy12g0133 593 PANTHER PECTINESTERASE 36 581 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy12g0133 593 MobiDBLite consensus disorder prediction 1 16 - -
Lcy12g0133 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 225 IPR035513 -
Lcy12g0133 593 SUPERFAMILY Pectin lyase-like 273 589 IPR011050 -
Lcy12g0133 593 NCBIfam pectinesterase inhibitor domain 54 223 IPR006501 GO:0004857(InterPro)
Lcy12g0133 593 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Lcy12g0133 593 SMART PMEI_2 74 221 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0133 Lcy-Chr12:1659503 Lcy3g1771 Lcy-Chr3:44975720 6.46E-171 dispersed
Lcy12g0133 Lcy-Chr12:1659503 Lcy6g0072 Lcy-Chr6:645012 3.64E-261 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0133 - - - 0.0