Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0154 ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGCTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGAGTCCTGAATCTCAGGCCAACGCTACCGTTTTTCTCGCCAAGTTTTACGGCCGTGCTGGACTCATGAACCTCATCAACGCCGGTCCCGACCATCTTCGCCCTGCGATCTTTAGATCTCTTCTCTATGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTCTGTCAGGCGGCTGTTGAGGCCGTGCTTAAAGGCGCTCCGATCACGCCGATTAACTCCGAGGCGGCGGCGACTGGCGATGGACCGCCGTTGAAGGCTTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGCCGCCTCCAACGACGGTGGAGCGAACCGGCGAGTCAAGACTCGGTGTCGCTTCAAGCGGTCGGCCGTGAAGGCGAAAGCGAGTAAAGGAATCGCATCCGCTGTCGTTGAGTCGACTCGGCGACTATGCTCCTCCACCGAGTTGAACCGGTCTTCGAGCGGCGAGTCGTCGCTGAGTCACCAATCCGATTCGCCGCATCTCGAGAATGAGAGCAAAGAGACCGAGAGTATGATCTCGGTGGAGACGGCGGAGGTTTCTCCTCCTCCGCCGCCGTCGGCTTTGTTCCGATCGGAGTCCAGTTCCGTACAAAAATCCCCCGGCCACGGCGGCGCGACTGCAATTCCAGAAAGTGAGTTAGCTCTAGAACTAACCCTGGGAATGGAGCCGGTGTCACGTGCCCAGCACGTAATTCCAATGAAGAAGCGAAAGATAGAGGCCGACTTCAGGCCCAATAACGAAGCGTGCAATACAATATTGGGCCTGGATTTTGCAGCCTAA 915 55.3 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGANRRVKTRCRFKRSAVKAKASKGIASAVVESTRRLCSSTELNRSSSGESSLSHQSDSPHLENESKETESMISVETAEVSPPPPPSALFRSESSSVQKSPGHGGATAIPESELALELTLGMEPVSRAQHVIPMKKRKIEADFRPNNEACNTILGLDFAA 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1893317 1894804 + Maker00039066 Lcy12g0154 648217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0154 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 267 - GO:0010468(PANTHER)
Lcy12g0154 304 PIRSF AS2 1 300 IPR017414 -
Lcy12g0154 304 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Lcy12g0154 304 MobiDBLite consensus disorder prediction 185 251 - -
Lcy12g0154 304 MobiDBLite consensus disorder prediction 185 203 - -
Lcy12g0154 304 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0154 Lcy-Chr12:1893317 Lcy7g0468 Lcy-Chr7:4153870 1.10E-63 dispersed
Lcy12g0154 Lcy-Chr12:1893317 Lcy2g0439 Lcy-Chr2:3668471 1.99E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19213 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0154 - - - 0.0