Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0160 ATGCCGGAAGAAACCATTCGGATAGATGACGTCATGGAAGCCGCTTCCGGTCCTCACTTCTCTGGCCTCCGACTCGACGGACTTCTCTCCTCTCCCCCGTCTTCCTCAACTTCCTCTCCGGCTCACCGTTTTTCTCTTTCCGCATCCTCTGCGCAGGCCGATGCCAACTCTCCCAAGCAGCCCTTCGTAATCGGTGTTTCTGGAGGTACTGCTTCCGGGAAGACGACGGTGTGTGATATGATTATCCAGCAACTGCATGATCATAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGTGGGTTGACAGCTGAGGAACTAGAACGTGTGCACGAGTATAATTTTGATCATCCTGATTCGTTCGACACGGAGCAGCTTGTGGATTGCATCGAGAAGCTAAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGCTTTCGCCAGGTAAATGCATCTAATGTCATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTTCGCAATCTGATGAACATGAAGATATTTGTTGACACAGATGCTGATGTGAGGCTCGCTCGTAGAATTAGACGTGATACAGTAGAAAGAGGCAGGGACATTAACTCCGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCGTTCTGCCATCAAAAAAGTATGCTGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATTCGTACAAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACAGTCATTCAGTCAACATTTCAGATACGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAGCATGATTTTGTGTTCTATTCAGATCGACTTATTCGTCTGGTTGTGGAGCACGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGGTCACTCCAACAGCATCTGTATACACTGGGGTTGATTTCTGCAAGAAACTATGTGGGGTATCCATTGTTCGAAGTGGTGAAAGTATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGCGAGGGAGATAATGGGCAGCAGCTGATATACGAGAAATTACCCAATGATATATCAGAGCGACATGTCCTCCTCCTAGATCCTGTTCTCGCAACTGGCAACTCAGCTAACCAAGCAATTGATCTACTCATACAGAAGGGAGTTCCAGAATCGCACATCATATTCCTCAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAAATTGTCACTTCTGAGATCGATGCTGGATTGAACGAAGAGTATCGTGTCATACCCGGTATGGGTGAATTTGGCGATCGTTACTTCGGAACCGATGATTAA 1449 44.93 MPEETIRIDDVMEAASGPHFSGLRLDGLLSSPPSSSTSSPAHRFSLSASSAQADANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDAGLNEEYRVIPGMGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1985360 1991092 - Maker00039018 Lcy12g0160 648223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0160 482 MobiDBLite consensus disorder prediction 28 57 - -
Lcy12g0160 482 FunFam Uridine kinase 58 264 - -
Lcy12g0160 482 CDD UMPK 63 261 IPR000764 -
Lcy12g0160 482 PRINTS Uridine kinase signature 91 102 - -
Lcy12g0160 482 PRINTS Uridine kinase signature 207 218 - -
Lcy12g0160 482 PRINTS Uridine kinase signature 193 203 - -
Lcy12g0160 482 PRINTS Uridine kinase signature 229 242 - -
Lcy12g0160 482 PRINTS Uridine kinase signature 61 78 - -
Lcy12g0160 482 PRINTS Uridine kinase signature 136 151 - -
Lcy12g0160 482 Gene3D - 57 264 IPR027417 -
Lcy12g0160 482 NCBIfam uridine kinase 60 261 IPR000764 -
Lcy12g0160 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Lcy12g0160 482 Gene3D - 265 480 IPR029057 -
Lcy12g0160 482 MobiDBLite consensus disorder prediction 25 58 - -
Lcy12g0160 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Lcy12g0160 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Lcy12g0160 482 PANTHER URIDINE KINASE 56 415 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Lcy12g0160 482 CDD PRTases_typeI 338 453 IPR000836 -
Lcy12g0160 482 FunFam Uridine kinase 265 480 - -
Lcy12g0160 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0160 K00876 - - csv:101207261 886.33
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy8g1180 . 69 556 PRT Gene Family AT2G16570 84.1 1.2e-241 833.2
Lcy8g1180 . 61 556 PRT Gene Family AT4G34740 83.5 1.4e-242 836.3
Lcy8g1180 . 34 529 PRT Gene Family AT4G38880 70.6 4.8e-197 684.9
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy12g1805 . 6 104 PRT Gene Family AT4G22570 80.8 1.2e-43 172.9
Lcy6g2077 . 1 97 PRT Gene Family AT4G22570 81.6 1.5e-41 166.0
Lcy13g2129 . 102 194 PRT Gene Family AT4G22570 79.6 4.0e-39 157.9
Lcy13g1798 . 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Lcy12g1805 . 1 96 PRT Gene Family AT4G12440 82.3 2.6e-40 161.8
Lcy6g2077 . 1 96 PRT Gene Family AT4G12440 80.2 1.8e-38 155.6
Lcy13g2129 . 98 193 PRT Gene Family AT4G12440 78.1 3.5e-37 151.4
Lcy13g1798 . 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy10g1606 . 1 188 PRT Gene Family AT1G71750 65.8 1.1e-69 260.4
Lcy12g0160 . 19 482 PRT Gene Family AT1G55810 74.6 9.3e-202 700.3
Lcy12g0160 . 80 482 PRT Gene Family AT3G27440 75.7 6.4e-181 630.9
Lcy12g0160 . 1 483 PRT Gene Family AT3G27190 86.4 1.3e-246 849.4
Lcy1g1484 . 12 275 PRT Gene Family AT3G53900 65.9 4.1e-97 352.1
Lcy12g0160 . 10 482 PRT Gene Family AT4G26510 76.1 1.9e-213 739.2
Lcy12g0160 . 1 482 PRT Gene Family AT5G40870 86.3 1.5e-245 845.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61