Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0163 ATGGTTCAGCCAACAAATTCATCCAAATTGCGATGGGGGGAGCTAGACGACGACGATGGGGATCTCGATTTTCTTCTCCCGCCCAAGCAAGTTATCGGTCCAGACGAAAATGGGTTGAAGAAAACTGTTGAGTATCAGTTTAATGAAGATGGTAACAAAGTCAAAATCACGACGACTACTCGAACTCGCAAGCTTGCCCATGCTCGCCTGAGTAAACATGCTGTGGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTCCATGAAGACGTCGGCAGTAGGCTCACAATGGTCTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTTTAACTGGCTCCAAATGGAGCAAACAAAAGGACAATCCCAATGCAAGTGATTCAAGTCTTCCTCTTGCCTCCTACAAAGGACCACTGCTACTGCAACATGAACCAGTGTTTTCAAGGCGACCCCAGGCGCTCGCCTATGGTGAGAGGCGAGGCAACTTGAGGTTGCTGCGCCTGGAAGGAAGCAAAAGCGACCTCCTTCAACCTAGCGCTCGCCCGATGGCGCCTTTGGTCGCATGTATGCGCCTTTGCCATGGTGAAGGCGAGCGCCTGAGGGAAAAATGGAGGCTCCCGGAGGAGGAAGAGGAGAGGAGAGAGAATGGAAAAAAGAGGCACAAGAGAAACCCCCCAGAGGGTTCTGGAGTTCAGAATCTAGTGTCACTTCTCTCAGGACGAAAAGACTGTTTGGAAATTTGCTTTTGCACTTCTCGTAGCAAACCAGAGGAGCCAAAGGTTGCAGGAGACCCGTTAGCCCAACTTGGCAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACTTGGTACCACAAGCTGATGGATTAGATAAGACTGTTGCACCAGAGGCTACAACTGCTGCTCCTGGTGCAACGAAGGGAGCCTATGTTCCTCCAGGTATGAGAGCAGGAGCAGAGAGGACTGGAACTGACATGAGACGTAGGAATGATGAAAACTCTGTTCGTGTCACCAACCTTTCAGAGGACACTAGAGAGCCTGACTTGCTTGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGTTTTGTGAACTTTGTGAACCGCGAGGATGCCCAAAGATCTATTAACAAACTCAATGGATACGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCCAGGGCGACTTAA 1296 50.23 MVQPTNSSKLRWGELDDDDGDLDFLLPPKQVIGPDENGLKKTVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGLTGSKWSKQKDNPNASDSSLPLASYKGPLLLQHEPVFSRRPQALAYGERRGNLRLLRLEGSKSDLLQPSARPMAPLVACMRLCHGEGERLREKWRLPEEEEERRENGKKRHKRNPPEGSGVQNLVSLLSGRKDCLEICFCTSRSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLVPQADGLDKTVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2048516 2053678 + Maker00038748 Lcy12g0163 648226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0163 431 SMART rrm1_1 351 424 IPR000504 GO:0003723(InterPro)
Lcy12g0163 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 428 IPR000504 GO:0003723(InterPro)
Lcy12g0163 431 CDD RRM_eIF3G_like 351 426 IPR034240 -
Lcy12g0163 431 MobiDBLite consensus disorder prediction 209 228 - -
Lcy12g0163 431 FunFam Eukaryotic translation initiation factor 3 subunit G 315 431 - -
Lcy12g0163 431 MobiDBLite consensus disorder prediction 117 133 - -
Lcy12g0163 431 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 42 426 - -
Lcy12g0163 431 MobiDBLite consensus disorder prediction 111 133 - -
Lcy12g0163 431 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 430 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy12g0163 431 Pfam RNA recognition motif 352 418 IPR000504 GO:0003723(InterPro)
Lcy12g0163 431 SUPERFAMILY RNA-binding domain, RBD 348 429 IPR035979 GO:0003676(InterPro)
Lcy12g0163 431 Gene3D - 322 431 IPR012677 -
Lcy12g0163 431 Pfam Eukaryotic translation initiation factor 3 subunit G 30 110 IPR024675 -
Lcy12g0163 431 Pfam Eukaryotic translation initiation factor 3 subunit G 258 300 IPR024675 -
Lcy12g0163 431 MobiDBLite consensus disorder prediction 209 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0163 Lcy-Chr12:2048516 Lcy5g2583 Lcy-Chr5:48494923 1.18E-178 dispersed
Lcy12g0163 Lcy-Chr12:2048516 Lcy3g2258 Lcy-Chr3:49413285 2.09E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0163 K03248 - csv:101207022 342.428