Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0168 ATGGCGGCTTCGGCTGACCGGCTCCGCCCTGTCGTGAAGCTTTCCGCCCCGGCGACTCGTTTTCACGATGATTCGGCGGAGACCCAGCCTCTGCTTTCGAGGGTGTTGAGTTATCCGATTGGGATTATTCACCACCAATTGCGCCGCCGTCCCGGTGCCGTGAAGCCCGAAGCGCCGCGGCGACGGCAGTCTTTCGGTCGAGAATTCGGGCATGCTGCTGCGGAAACCGTTCTTGTTACTCGGTTGAGCTTCACTCTCCTTCGATCTCTTGGGGTAGGGTACCGGTGGGTCGTAAGATTAACTGCACTTGCAGTGTATGCCATTCTTCTTATGCCTGGTTTTCTTCAAGTTATGTATGACTATTACTTCTCAAGTCACGTTCGAAGGGATATTATTTATGGAAATCAACCGAGAAATAGCTTGGATTTGTATTTACCTACAAATACGGATAAAAAAAAACCAGTTGTGATATTTGTTAGCGGTGGAGCTTGGATTATTGGATATAAGGCATGGGGAGCTCTTTTAGGACTGCAGTTGGCAGAGAGAGACATCATTGTGGCCTCAATTGACTATAGAAACTTCCCTCAGGGTACAATTAGCGACATGGTGAAAGATGTTTCTCAAGGGATTTCATTTGTCTGCAAGAATATAGCAGATTATGGAGGAGATCAGGACAGAATCTTTCTGATGGGACAATCAGCTGGTGCACATATTTCCGTTTGTGCCCTCTTGGAGCAAGCAGTCAAAGCTGGAAAAGGAGAGAGTGTAGATTGGAGTGTCTCCCAAATAAAATCTTATTTTGGTTTATCTGGAGGTTATAACTTATTGAACCTAGTTGATCACTTCGATAGTCGAGGTCTATATCGTTCCGTCTTTTTGAGCATAATGGAAGGTGAAGAATCTTTGTCCCAATTTTCCCCTGAAATAAGAATCCGAGATCCTAGCATTAGAGATGTTGTATCCAGCTTACCTCCTTTTGTTCTTTTCCATGGTACTGGTGATTATTCAATCCCATCAGATGCCAGTGAAACTTTTGCGGAGACACTTAGACAAGCTGGGGCGCAAGCTGACCTATTTCTCTATGAGGGAAAAACTCATACAGATGTGTTCCTTCAGGATCCGTTTAGGGGAGGCAGTTACGAACTTTTCGATCAAATAGTCGCCATATTACATGCAGGCGACGAGGAAGCTCTTGCAAAGGATTCTATGGCACCGCCAAAACCGCGCCTTGTTCCAGAGATTTTGATTATATTGGCAAGTATGGTTAGCCCTTTCTGA 1278 45.7 MAASADRLRPVVKLSAPATRFHDDSAETQPLLSRVLSYPIGIIHHQLRRRPGAVKPEAPRRRQSFGREFGHAAAETVLVTRLSFTLLRSLGVGYRWVVRLTALAVYAILLMPGFLQVMYDYYFSSHVRRDIIYGNQPRNSLDLYLPTNTDKKKPVVIFVSGGAWIIGYKAWGALLGLQLAERDIIVASIDYRNFPQGTISDMVKDVSQGISFVCKNIADYGGDQDRIFLMGQSAGAHISVCALLEQAVKAGKGESVDWSVSQIKSYFGLSGGYNLLNLVDHFDSRGLYRSVFLSIMEGEESLSQFSPEIRIRDPSIRDVVSSLPPFVLFHGTGDYSIPSDASETFAETLRQAGAQADLFLYEGKTHTDVFLQDPFRGGSYELFDQIVAILHAGDEEALAKDSMAPPKPRLVPEILIILASMVSPF 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2078603 2086290 + Maker00039009 Lcy12g0168 648231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0168 425 FunFam Isoprenylcysteine alpha-carbonyl methylesterase ICME 123 374 - -
Lcy12g0168 425 SUPERFAMILY alpha/beta-Hydrolases 104 387 IPR029058 -
Lcy12g0168 425 Pfam BD-FAE 141 349 IPR049492 -
Lcy12g0168 425 Gene3D alpha/beta hydrolase 120 373 IPR029058 -
Lcy12g0168 425 PANTHER AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C 45 390 IPR050300 GO:0016298(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0840 Lcy-Chr10:25828844 Lcy12g0168 Lcy-Chr12:2078603 2.81E-87 dispersed
Lcy12g0168 Lcy-Chr12:2078603 Lcy1g2562 Lcy-Chr1:47023620 2.62E-06 dispersed
Lcy12g0168 Lcy-Chr12:2078603 Lcy7g0403 Lcy-Chr7:3443914 9.15E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0168 K15889 - csv:101206540 622.083