Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0184 ATGAAGCGAGAACACCCTCACCAATCCCCAGGTTCCGCCGCCGGCAAGGCCAAGATGTGGGCGGAGGAGGAGGAGGACGACGACAAGCATCTAGCCGCTCTCGGCTACAATGTCCGGTCGTCGGACATGGCCGACGTCGCTCTGAAGCTCGAACAGCTCGAAATGGTGATGGGTCTGTCTGAAGAAGACGGAATTTCTCACCTCTCTGCGAACACCGTCCATTACAATCCCTCCGATGTGTCTTCCTGGGTTCAAAGCATGCTCGCTGAACTCAACAGCCCCCTTCAATCCCAACGAATCGACGACCCTGTTCTCGCCATAGCCGAATCGACTTCCTCCTCCGTCGCCGCCTTCGCCGACGACTCCGAGTACGATCTCCGAGCGATTCCGGGCGTTGCTGCTTACCCCCAGATCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCCGAGTCCGAATCGCTTCTTGTTCCTGCTTCTTCTTCTTCTTCTTCGTCGTCGGAGCCGTCGCGCACGGTGGTTCTGGTGGACTCCGCCGAGACCGGCGTCCGTCTTGTCCACAGTCTCCTCGCCTGCGCCGACGCCGTCGACACCAACAACCTCAACCTCGCCGACGCGTTGCTGAAACACATCAGAATCCTCGTCGAGGCCCAAGCCGGCGCTATGAGGAAAGTCGCCGGTTATTTCGCCGAAGCTCTCACTCGCCGGATTTACAGAATCCACCCACCGGAGACATTTGATTCATCTTCCTACACCGATCTCCTCCAAATGCATTTCTACGAATCTTGCCCGTATTTGAAATTCGCCCATTTCACTGCCAATCAAGCGATTCTCGAATCTGTTGGCGCCGCCGCAACCGTCCACGTCGTCGATTTCAACCTCCAGCAGGGCCTCCAATGGCCGGCGTTGATACAAGCCCTGGCCCTCCGGCCAGGTGGGCCGCCGGCGTTTCATCTCACCGGAATCGGCCAAAATTCCAGCGACGGATTGCAGGAAGTGGGTTCGAAATTGGCCCAATTCGCGGATAACATCGGCGTGAAATTCGAATTCCGTGGCTACTTCTGCAACAATTTAGCCGATCTGGACCCTTCGATGCTCAATTTAGAATCGGAAACCGTCGCCATAAACTCCATTTTCGAGCTCCACCGGCAACTGGCCCATCCGGGCGCGATCGAGAAAGTTATAACCACGATCAAAGAACTCAACCCGAAAATCGTCACCGTCGTGGAACAGGTCGCCGACCTGAACGGACCATCCTTCGTCGAGCGATTCACGGAAGCGTTACACTGTTACTCGAGCTTGTTCGATTCGTTGGAAGGGTCGCCGGCGGGGGAGGAGGATGTGGCGAGGTCGGAGGAGTATCTGGGGAGGCAAATCTGCAACGTGGTGGCGTGTGAAGGTTCCGACCGGGTGGAGCGGCACGAGACGGTGGCGCAGTGGCGGAGCCGGATGGGTTCGGGTGGGTTCGAGATGGTTCATCTGGGTTCGAACGCGTTCAAGCAGGCGAGTACTTTGCTGGCTCTGTTCGGCGGCGGAAACGGGTACAGAGTTGAAGAGAACAATGGGAGTTTGACGTTGGGTTGGCACACTCGGCCGCTCATCGCCACCTCGGCATGGGCGGTGGCCGCCGGTAACGGCGGCGAGTCGACTCGGCCGAGAATGGAATCCATTGGTTTCTCACCACCAATTTGCAAATCAAACTTGGATGGTGTACAAGGAGCTGACGAGGACAACCGGACAGAGATAGGACCAGGAGACGACCCAGAGGAAGACCGGACCAACGGGCTGGGCCAACGTGGCCCGACCCGTACGGTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCCGCTCGGTCCCTCCTGCCTCTGGCCGCCCTGGTTCCACCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGATGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTTACTGTCGATTATCACGTGGAGCGAAGACAAGGCAAACCTGCACAACGGTGTGGTGCTTGCCACAACGCCTTCGATGCTTAAATCAGAAAGATGAAGGAAGAGAGCTAGAGAGCAAGACGAGAAGTAGGGTTCAAAGAATAGTTTTGGGGATCCCTTCTTTAGTGACGAAGAAGGGTTTAAATACATTTTCGTGTCTTAGGATTTCTAGACTTTCGGAGATGATTCGGGCTGAACCAGATGGAACCAGGGCGTCAAGAGGCACCAGGGACCAAACGAAGACGGAAGGACTCCGCCCATGGCCGAGGCCGACCATGGGGGTTGGGCCAAGGCTCGATCCCTCCGGCCTTGGCCCGACCCTTTGGCCTGTTCTTCCTCCAGGGTCCGTTTCCTGGTTGTCTCCTTGGGCTGGTATTGCGTTGTCCTCGTCAGCTTCTTGCATATCGGAAGTTGATTAG 2481 56.87 MKREHPHQSPGSAAGKAKMWAEEEEDDDKHLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSANTVHYNPSDVSSWVQSMLAELNSPLQSQRIDDPVLAIAESTSSSVAAFADDSEYDLRAIPGVAAYPQIDSTNPRKRFKKSESESLLVPASSSSSSSSEPSRTVVLVDSAETGVRLVHSLLACADAVDTNNLNLADALLKHIRILVEAQAGAMRKVAGYFAEALTRRIYRIHPPETFDSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGAAATVHVVDFNLQQGLQWPALIQALALRPGGPPAFHLTGIGQNSSDGLQEVGSKLAQFADNIGVKFEFRGYFCNNLADLDPSMLNLESETVAINSIFELHRQLAHPGAIEKVITTIKELNPKIVTVVEQVADLNGPSFVERFTEALHCYSSLFDSLEGSPAGEEDVARSEEYLGRQICNVVACEGSDRVERHETVAQWRSRMGSGGFEMVHLGSNAFKQASTLLALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWAVAAGNGGESTRPRMESIGFSPPICKSNLDGVQGADEDNRTEIGPGDDPEEDRTNGLGQRGPTRTVGPLARAESVCLRSVPPASGRPGSTWFVPKRLRIPKNPRSMSSIGGGVASTTPMCRFTLLQATSSPALKQIYCRLSRGAKTRQTCTTVWCLPQRLRCLNQKDEGRELESKTRSRVQRIVLGIPSLVTKKGLNTFSCLRISRLSEMIRAEPDGTRASRGTRDQTKTEGLRPWPRPTMGVGPRLDPSGLGPTLWPVLPPGSVSWLSPWAGIALSSSASCISEVD 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2247346 2255748 - Maker00039003 Lcy12g0184 648247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0184 826 MobiDBLite consensus disorder prediction 1 26 - -
Lcy12g0184 826 MobiDBLite consensus disorder prediction 558 604 - -
Lcy12g0184 826 FunFam DELLA protein GAI 26 91 - -
Lcy12g0184 826 SMART DELLA_2 28 101 - -
Lcy12g0184 826 MobiDBLite consensus disorder prediction 754 781 - -
Lcy12g0184 826 Pfam Transcriptional regulator DELLA protein N terminal 28 94 IPR021914 -
Lcy12g0184 826 MobiDBLite consensus disorder prediction 754 771 - -
Lcy12g0184 826 ProSiteProfiles GRAS family profile. 176 540 IPR005202 -
Lcy12g0184 826 MobiDBLite consensus disorder prediction 572 596 - -
Lcy12g0184 826 Gene3D - 27 91 IPR038088 -
Lcy12g0184 826 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 162 539 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Lcy12g0184 826 Pfam GRAS domain family 185 539 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0184 K14494 - - csv:101203095 875.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0184 Lcy-Chr12:2247346 Lcy1g1654 Lcy-Chr1:17031307 7.44E-59 dispersed
Lcy4g1787 Lcy-Chr4:43931314 Lcy12g0184 Lcy-Chr12:2247346 1.70E-15 dispersed
Lcy10g1141 Lcy-Chr10:33820476 Lcy12g0184 Lcy-Chr12:2247346 1.99E-197 transposed
Lcy10g1208 Lcy-Chr10:34721064 Lcy12g0184 Lcy-Chr12:2247346 7.86E-44 transposed
Lcy10g1389 Lcy-Chr10:37256932 Lcy12g0184 Lcy-Chr12:2247346 8.47E-211 transposed
Lcy10g2297 Lcy-Chr10:46598355 Lcy12g0184 Lcy-Chr12:2247346 3.16E-79 transposed
Lcy1g1131 Lcy-Chr1:10481625 Lcy12g0184 Lcy-Chr12:2247346 2.99E-33 transposed
Lcy2g0097 Lcy-Chr2:760280 Lcy12g0184 Lcy-Chr12:2247346 4.16E-57 transposed
Lcy2g0779 Lcy-Chr2:6922706 Lcy12g0184 Lcy-Chr12:2247346 1.10E-134 transposed
Lcy3g1297 Lcy-Chr3:39124403 Lcy12g0184 Lcy-Chr12:2247346 8.37E-41 transposed
Lcy5g1761 Lcy-Chr5:40288986 Lcy12g0184 Lcy-Chr12:2247346 5.31E-18 transposed
Lcy8g0321 Lcy-Chr8:9932857 Lcy12g0184 Lcy-Chr12:2247346 3.40E-35 transposed
Lcy10g1429 Lcy-Chr10:37895497 Lcy12g0184 Lcy-Chr12:2247346 9.24E-11 wgd
Lcy11g0280 Lcy-Chr11:4113827 Lcy12g0184 Lcy-Chr12:2247346 1.70E-26 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g0199 . 77 757 GRAS Transcription Factor Family AT2G37650 54.6 4.4e-198 688.7
Lcy11g0169 . 245 697 GRAS Transcription Factor Family AT3G46600 50.5 1.1e-127 454.5
Lcy1g0926 . 49 470 GRAS Transcription Factor Family AT3G49950 60.7 1.1e-137 487.3
Lcy6g2096 . 417 781 GRAS Transcription Factor Family AT3G60630 51.4 6.4e-92 335.9
Lcy6g0948 . 80 531 GRAS Transcription Factor Family AT4G36710 54.4 9.6e-128 454.5
Lcy6g0725 . 42 449 GRAS Transcription Factor Family AT5G41920 67.8 3.9e-151 531.9
Lcy1g1654 . 458 834 GRAS Transcription Factor Family AT5G41920 56.6 4.6e-115 412.1
Lcy1g0718 . 61 601 GRAS Transcription Factor Family AT5G66770 57.7 1.3e-166 583.9
Lcy6g0963 . 8 537 GRAS Transcription Factor Family AT5G66770 56.6 1.8e-152 537.0
Lcy8g1366 . 44 535 GRAS Transcription Factor Family AT1G50600 60.0 1.6e-165 580.1
Lcy6g1707 . 106 541 GRAS Transcription Factor Family AT1G50600 64.4 5.5e-161 565.1
Lcy9g1234 . 223 593 GRAS Transcription Factor Family AT1G50600 62.5 7.9e-136 481.5
Lcy9g0957 . 195 577 GRAS Transcription Factor Family AT1G50600 50.7 7.0e-108 388.7
Lcy10g1389 . 44 579 GRAS Transcription Factor Family AT1G14920 68.8 1.1e-209 726.9
Lcy10g1141 . 1305 1851 GRAS Transcription Factor Family AT1G14920 61.6 1.8e-180 629.8
Lcy12g0184 . 1 544 GRAS Transcription Factor Family AT1G14920 54.1 3.4e-158 555.8
Lcy10g1389 . 1 577 GRAS Transcription Factor Family AT1G66350 57.6 2.2e-175 612.8
Lcy10g1141 . 1305 1852 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-175 612.1
Lcy12g0184 . 1 541 GRAS Transcription Factor Family AT1G66350 58.3 2.6e-168 589.3
Lcy8g1797 . 260 789 GRAS Transcription Factor Family AT1G07520 50.5 7.5e-142 501.5
Lcy8g1366 . 8 535 GRAS Transcription Factor Family AT5G48150 65.5 1.0e-193 673.7
Lcy6g1707 . 111 541 GRAS Transcription Factor Family AT5G48150 69.4 1.8e-174 609.8
Lcy9g1234 . 113 593 GRAS Transcription Factor Family AT5G48150 51.7 3.0e-137 486.1
Lcy10g1389 . 46 578 GRAS Transcription Factor Family AT2G01570 69.7 3.3e-215 745.3
Lcy10g1141 . 1307 1849 GRAS Transcription Factor Family AT2G01570 60.9 4.1e-181 632.1
Lcy12g0184 . 27 542 GRAS Transcription Factor Family AT2G01570 57.8 2.9e-163 572.8
Lcy10g1389 . 1 577 GRAS Transcription Factor Family AT1G66350 57.6 2.2e-175 612.8
Lcy10g1141 . 1305 1852 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-175 612.1
Lcy12g0184 . 1 541 GRAS Transcription Factor Family AT1G66350 58.3 2.6e-168 589.3
Lcy10g1141 . 1307 1848 GRAS Transcription Factor Family AT3G03450 60.6 1.3e-173 607.1
Lcy10g1389 . 46 576 GRAS Transcription Factor Family AT3G03450 60.6 4.6e-171 598.6
Lcy12g0184 . 27 542 GRAS Transcription Factor Family AT3G03450 58.6 3.4e-158 555.8
Lcy10g1141 . 1306 1851 GRAS Transcription Factor Family AT5G17490 56.8 2.1e-157 553.1
Lcy10g1389 . 42 579 GRAS Transcription Factor Family AT5G17490 56.9 4.7e-157 552.0
Lcy12g0184 . 24 543 GRAS Transcription Factor Family AT5G17490 55.1 9.3e-145 511.1
Lcy9g0957 . 1 577 GRAS Transcription Factor Family AT1G21450 57.6 8.8e-176 614.4
Lcy6g1707 . 165 541 GRAS Transcription Factor Family AT1G21450 53.4 2.7e-116 416.8
Lcy5g0199 . 307 756 GRAS Transcription Factor Family AT5G59450 50.1 1.2e-122 438.0
Lcy8g1366 . 15 534 GRAS Transcription Factor Family AT4G17230 51.3 1.1e-145 514.2
Lcy6g1707 . 84 541 GRAS Transcription Factor Family AT4G17230 53.7 2.2e-133 473.4
Lcy9g1234 . 220 593 GRAS Transcription Factor Family AT4G17230 53.2 3.3e-113 406.4
Lcy8g1366 . 123 535 GRAS Transcription Factor Family AT2G04890 67.1 1.3e-162 570.1
Lcy6g1707 . 163 541 GRAS Transcription Factor Family AT2G04890 65.2 5.1e-146 515.0
Lcy9g1234 . 175 593 GRAS Transcription Factor Family AT2G04890 55.7 1.1e-129 460.7
Lcy2g1246 . 1 472 GRAS Transcription Factor Family AT1G50420 65.6 3.9e-174 608.6
Lcy7g0679 . 180 641 GRAS Transcription Factor Family AT1G50420 61.1 5.7e-157 551.6
Lcy6g2096 . 417 780 GRAS Transcription Factor Family AT4G00150 55.7 1.3e-104 377.9
Lcy1g0718 . 57 601 GRAS Transcription Factor Family AT3G50650 53.1 3.0e-146 516.2
Lcy6g0963 . 11 537 GRAS Transcription Factor Family AT3G50650 51.8 1.2e-131 467.6
Lcy1g1654 . 180 832 GRAS Transcription Factor Family AT3G54220 60.4 2.2e-204 709.5
Lcy6g0725 . 82 447 GRAS Transcription Factor Family AT3G54220 64.5 5.8e-136 482.3
Lcy1g0915 . 101 492 GRAS Transcription Factor Family AT4G37650 68.3 2.2e-157 553.1
Lcy8g0721 . 115 503 GRAS Transcription Factor Family AT4G37650 61.7 3.8e-138 489.2
Lcy3g1226 . 62 453 GRAS Transcription Factor Family AT4G37650 51.8 8.3e-117 418.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19217 None None None None Lcy TF