Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0184 ATGAAGCGAGAACACCCTCACCAATCCCCAGGTTCCGCCGCCGGCAAGGCCAAGATGTGGGCGGAGGAGGAGGAGGACGACGACAAGCATCTAGCCGCTCTCGGCTACAATGTCCGGTCGTCGGACATGGCCGACGTCGCTCTGAAGCTCGAACAGCTCGAAATGGTGATGGGTCTGTCTGAAGAAGACGGAATTTCTCACCTCTCTGCGAACACCGTCCATTACAATCCCTCCGATGTGTCTTCCTGGGTTCAAAGCATGCTCGCTGAACTCAACAGCCCCCTTCAATCCCAACGAATCGACGACCCTGTTCTCGCCATAGCCGAATCGACTTCCTCCTCCGTCGCCGCCTTCGCCGACGACTCCGAGTACGATCTCCGAGCGATTCCGGGCGTTGCTGCTTACCCCCAGATCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCCGAGTCCGAATCGCTTCTTGTTCCTGCTTCTTCTTCTTCTTCTTCGTCGTCGGAGCCGTCGCGCACGGTGGTTCTGGTGGACTCCGCCGAGACCGGCGTCCGTCTTGTCCACAGTCTCCTCGCCTGCGCCGACGCCGTCGACACCAACAACCTCAACCTCGCCGACGCGTTGCTGAAACACATCAGAATCCTCGTCGAGGCCCAAGCCGGCGCTATGAGGAAAGTCGCCGGTTATTTCGCCGAAGCTCTCACTCGCCGGATTTACAGAATCCACCCACCGGAGACATTTGATTCATCTTCCTACACCGATCTCCTCCAAATGCATTTCTACGAATCTTGCCCGTATTTGAAATTCGCCCATTTCACTGCCAATCAAGCGATTCTCGAATCTGTTGGCGCCGCCGCAACCGTCCACGTCGTCGATTTCAACCTCCAGCAGGGCCTCCAATGGCCGGCGTTGATACAAGCCCTGGCCCTCCGGCCAGGTGGGCCGCCGGCGTTTCATCTCACCGGAATCGGCCAAAATTCCAGCGACGGATTGCAGGAAGTGGGTTCGAAATTGGCCCAATTCGCGGATAACATCGGCGTGAAATTCGAATTCCGTGGCTACTTCTGCAACAATTTAGCCGATCTGGACCCTTCGATGCTCAATTTAGAATCGGAAACCGTCGCCATAAACTCCATTTTCGAGCTCCACCGGCAACTGGCCCATCCGGGCGCGATCGAGAAAGTTATAACCACGATCAAAGAACTCAACCCGAAAATCGTCACCGTCGTGGAACAGGTCGCCGACCTGAACGGACCATCCTTCGTCGAGCGATTCACGGAAGCGTTACACTGTTACTCGAGCTTGTTCGATTCGTTGGAAGGGTCGCCGGCGGGGGAGGAGGATGTGGCGAGGTCGGAGGAGTATCTGGGGAGGCAAATCTGCAACGTGGTGGCGTGTGAAGGTTCCGACCGGGTGGAGCGGCACGAGACGGTGGCGCAGTGGCGGAGCCGGATGGGTTCGGGTGGGTTCGAGATGGTTCATCTGGGTTCGAACGCGTTCAAGCAGGCGAGTACTTTGCTGGCTCTGTTCGGCGGCGGAAACGGGTACAGAGTTGAAGAGAACAATGGGAGTTTGACGTTGGGTTGGCACACTCGGCCGCTCATCGCCACCTCGGCATGGGCGGTGGCCGCCGGTAACGGCGGCGAGTCGACTCGGCCGAGAATGGAATCCATTGGTTTCTCACCACCAATTTGCAAATCAAACTTGGATGGTGTACAAGGAGCTGACGAGGACAACCGGACAGAGATAGGACCAGGAGACGACCCAGAGGAAGACCGGACCAACGGGCTGGGCCAACGTGGCCCGACCCGTACGGTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCCGCTCGGTCCCTCCTGCCTCTGGCCGCCCTGGTTCCACCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGATGTGCAGGTTTACTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTTACTGTCGATTATCACGTGGAGCGAAGACAAGGCAAACCTGCACAACGGTGTGGTGCTTGCCACAACGCCTTCGATGCTTAAATCAGAAAGATGAAGGAAGAGAGCTAGAGAGCAAGACGAGAAGTAGGGTTCAAAGAATAGTTTTGGGGATCCCTTCTTTAGTGACGAAGAAGGGTTTAAATACATTTTCGTGTCTTAGGATTTCTAGACTTTCGGAGATGATTCGGGCTGAACCAGATGGAACCAGGGCGTCAAGAGGCACCAGGGACCAAACGAAGACGGAAGGACTCCGCCCATGGCCGAGGCCGACCATGGGGGTTGGGCCAAGGCTCGATCCCTCCGGCCTTGGCCCGACCCTTTGGCCTGTTCTTCCTCCAGGGTCCGTTTCCTGGTTGTCTCCTTGGGCTGGTATTGCGTTGTCCTCGTCAGCTTCTTGCATATCGGAAGTTGATTAG 2481 56.87 MKREHPHQSPGSAAGKAKMWAEEEEDDDKHLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSANTVHYNPSDVSSWVQSMLAELNSPLQSQRIDDPVLAIAESTSSSVAAFADDSEYDLRAIPGVAAYPQIDSTNPRKRFKKSESESLLVPASSSSSSSSEPSRTVVLVDSAETGVRLVHSLLACADAVDTNNLNLADALLKHIRILVEAQAGAMRKVAGYFAEALTRRIYRIHPPETFDSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGAAATVHVVDFNLQQGLQWPALIQALALRPGGPPAFHLTGIGQNSSDGLQEVGSKLAQFADNIGVKFEFRGYFCNNLADLDPSMLNLESETVAINSIFELHRQLAHPGAIEKVITTIKELNPKIVTVVEQVADLNGPSFVERFTEALHCYSSLFDSLEGSPAGEEDVARSEEYLGRQICNVVACEGSDRVERHETVAQWRSRMGSGGFEMVHLGSNAFKQASTLLALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWAVAAGNGGESTRPRMESIGFSPPICKSNLDGVQGADEDNRTEIGPGDDPEEDRTNGLGQRGPTRTVGPLARAESVCLRSVPPASGRPGSTWFVPKRLRIPKNPRSMSSIGGGVASTTPMCRFTLLQATSSPALKQIYCRLSRGAKTRQTCTTVWCLPQRLRCLNQKDEGRELESKTRSRVQRIVLGIPSLVTKKGLNTFSCLRISRLSEMIRAEPDGTRASRGTRDQTKTEGLRPWPRPTMGVGPRLDPSGLGPTLWPVLPPGSVSWLSPWAGIALSSSASCISEVD 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2247346 2255748 - Maker00039003 Lcy12g0184 648247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0184 826 MobiDBLite consensus disorder prediction 1 26 - -
Lcy12g0184 826 MobiDBLite consensus disorder prediction 558 604 - -
Lcy12g0184 826 FunFam DELLA protein GAI 26 91 - -
Lcy12g0184 826 SMART DELLA_2 28 101 - -
Lcy12g0184 826 MobiDBLite consensus disorder prediction 754 781 - -
Lcy12g0184 826 Pfam Transcriptional regulator DELLA protein N terminal 28 94 IPR021914 -
Lcy12g0184 826 MobiDBLite consensus disorder prediction 754 771 - -
Lcy12g0184 826 ProSiteProfiles GRAS family profile. 176 540 IPR005202 -
Lcy12g0184 826 MobiDBLite consensus disorder prediction 572 596 - -
Lcy12g0184 826 Gene3D - 27 91 IPR038088 -
Lcy12g0184 826 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 162 539 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Lcy12g0184 826 Pfam GRAS domain family 185 539 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0184 Lcy-Chr12:2247346 Lcy1g1654 Lcy-Chr1:17031307 7.44E-59 dispersed
Lcy4g1787 Lcy-Chr4:43931314 Lcy12g0184 Lcy-Chr12:2247346 1.70E-15 dispersed
Lcy10g1141 Lcy-Chr10:33820476 Lcy12g0184 Lcy-Chr12:2247346 1.99E-197 transposed
Lcy10g1208 Lcy-Chr10:34721064 Lcy12g0184 Lcy-Chr12:2247346 7.86E-44 transposed
Lcy10g1389 Lcy-Chr10:37256932 Lcy12g0184 Lcy-Chr12:2247346 8.47E-211 transposed
Lcy10g2297 Lcy-Chr10:46598355 Lcy12g0184 Lcy-Chr12:2247346 3.16E-79 transposed
Lcy1g1131 Lcy-Chr1:10481625 Lcy12g0184 Lcy-Chr12:2247346 2.99E-33 transposed
Lcy2g0097 Lcy-Chr2:760280 Lcy12g0184 Lcy-Chr12:2247346 4.16E-57 transposed
Lcy2g0779 Lcy-Chr2:6922706 Lcy12g0184 Lcy-Chr12:2247346 1.10E-134 transposed
Lcy3g1297 Lcy-Chr3:39124403 Lcy12g0184 Lcy-Chr12:2247346 8.37E-41 transposed
Lcy5g1761 Lcy-Chr5:40288986 Lcy12g0184 Lcy-Chr12:2247346 5.31E-18 transposed
Lcy8g0321 Lcy-Chr8:9932857 Lcy12g0184 Lcy-Chr12:2247346 3.40E-35 transposed
Lcy10g1429 Lcy-Chr10:37895497 Lcy12g0184 Lcy-Chr12:2247346 9.24E-11 wgd
Lcy11g0280 Lcy-Chr11:4113827 Lcy12g0184 Lcy-Chr12:2247346 1.70E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19217 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0184 K14494 - csv:101203095 875.159