Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0185 | ATGGCGACTCTAATGTCGGGCTCCAGAATTCAACCAGCAGCTTCTGTTCTTTCCTCCTCCATCAAGCATCTGGGTTTTAGTTCCTACCTTCGTTCCAATTCCTCGCTTTCTCCTTTTCACCATTCCTCCTTGTGCTTCAGGCGCTCTGGACCCAGACGAGCTCTCTCTGTTTCCATGTCGGTTGGCCCTCTTGAAACCTGTGTCAAAGCTTCCATTACAGTGCCCAACAGGCTCGGCGACTGCCCTTTTTGCCAAAGGGTACTACTAACTTTGGAGGAAAAGCATCTACCCTATGACCTAAAGTTGGTAGACCTGTCAAACAAACCAGAATGGTTCTTAAAAATAAATTCAGAGGGTAAAGTTCCTGTGATTAAATTTGATGAGCAATGGGTTGCTGATTCAGATGTTATAACTCAAACATTGGAAGAGAAGTACCCAAATCCACCTTTGGCGACCCCTCCTGATAAATCTTCAGTAGGATCAAAGATTTTCTCCACATTTATTGCTTTTCTAAAGAGCAAGGATCCAAATGATGGAACAGAACAAGCATTACTCAGCGAGCTAAGTTCTTTCAATGATCACATCAAAGAGAATGGCCCTTTCATCAATGGGAAAGAGATTTCTGCTGCAGACCTGTCACTTGGTCCAAAGTTGTACCATCTAGAAATTGCATTGGGTCACTATAAGAACTGGTCTGTTCCTGACAGCCTACCCTACGTTAAGTCTTACATGAAGAGCATATTCTCCAGAGAGTCATTTGCAAAAACTCGTGCGCTACCTGAGGATGTTGTTGCTGGTTGGCGTCCAAAGAATGATCTCGACCGTGTCTTAAAGTATAAAGCAGAAGCGAATTCAACGTTAAGACCACGTCAATCTTTACACTTTCCTTCTCTTGTTTTCTACAAGCAGAGGACAGAGTGA | 921 | 43.65 | MATLMSGSRIQPAASVLSSSIKHLGFSSYLRSNSSLSPFHHSSLCFRRSGPRRALSVSMSVGPLETCVKASITVPNRLGDCPFCQRVLLTLEEKHLPYDLKLVDLSNKPEWFLKINSEGKVPVIKFDEQWVADSDVITQTLEEKYPNPPLATPPDKSSVGSKIFSTFIAFLKSKDPNDGTEQALLSELSSFNDHIKENGPFINGKEISAADLSLGPKLYHLEIALGHYKNWSVPDSLPYVKSYMKSIFSRESFAKTRALPEDVVAGWRPKNDLDRVLKYKAEANSTLRPRQSLHFPSLVFYKQRTE | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2281418 | 2287082 | + | Maker00038908 | Lcy12g0185 | 648248 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0185 | 306 | FunFam | Glutathione S-transferase DHAR3, chloroplastic | 151 | 272 | - | - | |
Lcy12g0185 | 306 | FunFam | Glutathione S-transferase DHAR3 chloroplastic | 62 | 150 | - | - | |
Lcy12g0185 | 306 | Gene3D | Glutaredoxin | 63 | 150 | - | - | |
Lcy12g0185 | 306 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 71 | 149 | IPR004045 | - | |
Lcy12g0185 | 306 | SFLD | Main (cytGST) | 80 | 247 | - | - | |
Lcy12g0185 | 306 | SUPERFAMILY | GST C-terminal domain-like | 144 | 268 | IPR036282 | - | |
Lcy12g0185 | 306 | CDD | GST_N_family | 81 | 142 | - | - | |
Lcy12g0185 | 306 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 127 | 273 | IPR010987 | - | |
Lcy12g0185 | 306 | Pfam | Glutathione S-transferase, N-terminal domain | 81 | 143 | IPR004045 | - | |
Lcy12g0185 | 306 | PANTHER | GLUTATHIONE S-TRANSFERASE DHAR2-RELATED | 64 | 270 | IPR044627 | GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(InterPro)|GO:0045174(PANTHER)|GO:0098869(InterPro) | |
Lcy12g0185 | 306 | SUPERFAMILY | Thioredoxin-like | 79 | 148 | IPR036249 | - | |
Lcy12g0185 | 306 | CDD | GST_C_DHAR | 150 | 270 | - | - | |
Lcy12g0185 | 306 | Gene3D | - | 151 | 272 | - | - | |
Lcy12g0185 | 306 | SFLD | Glutathione Transferase (cytosolic) | 80 | 247 | IPR040079 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0185 | Lcy-Chr12:2281418 | Lcy7g0839 | Lcy-Chr7:8278948 | 2.22E-93 | dispersed | |
Lcy12g0185 | Lcy-Chr12:2281418 | Lcy12g1111 | Lcy-Chr12:21109465 | 3.86E-46 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0185 | K21888 | - | csv:101203335 | 499.204 |