Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0185 ATGGCGACTCTAATGTCGGGCTCCAGAATTCAACCAGCAGCTTCTGTTCTTTCCTCCTCCATCAAGCATCTGGGTTTTAGTTCCTACCTTCGTTCCAATTCCTCGCTTTCTCCTTTTCACCATTCCTCCTTGTGCTTCAGGCGCTCTGGACCCAGACGAGCTCTCTCTGTTTCCATGTCGGTTGGCCCTCTTGAAACCTGTGTCAAAGCTTCCATTACAGTGCCCAACAGGCTCGGCGACTGCCCTTTTTGCCAAAGGGTACTACTAACTTTGGAGGAAAAGCATCTACCCTATGACCTAAAGTTGGTAGACCTGTCAAACAAACCAGAATGGTTCTTAAAAATAAATTCAGAGGGTAAAGTTCCTGTGATTAAATTTGATGAGCAATGGGTTGCTGATTCAGATGTTATAACTCAAACATTGGAAGAGAAGTACCCAAATCCACCTTTGGCGACCCCTCCTGATAAATCTTCAGTAGGATCAAAGATTTTCTCCACATTTATTGCTTTTCTAAAGAGCAAGGATCCAAATGATGGAACAGAACAAGCATTACTCAGCGAGCTAAGTTCTTTCAATGATCACATCAAAGAGAATGGCCCTTTCATCAATGGGAAAGAGATTTCTGCTGCAGACCTGTCACTTGGTCCAAAGTTGTACCATCTAGAAATTGCATTGGGTCACTATAAGAACTGGTCTGTTCCTGACAGCCTACCCTACGTTAAGTCTTACATGAAGAGCATATTCTCCAGAGAGTCATTTGCAAAAACTCGTGCGCTACCTGAGGATGTTGTTGCTGGTTGGCGTCCAAAGAATGATCTCGACCGTGTCTTAAAGTATAAAGCAGAAGCGAATTCAACGTTAAGACCACGTCAATCTTTACACTTTCCTTCTCTTGTTTTCTACAAGCAGAGGACAGAGTGA 921 43.65 MATLMSGSRIQPAASVLSSSIKHLGFSSYLRSNSSLSPFHHSSLCFRRSGPRRALSVSMSVGPLETCVKASITVPNRLGDCPFCQRVLLTLEEKHLPYDLKLVDLSNKPEWFLKINSEGKVPVIKFDEQWVADSDVITQTLEEKYPNPPLATPPDKSSVGSKIFSTFIAFLKSKDPNDGTEQALLSELSSFNDHIKENGPFINGKEISAADLSLGPKLYHLEIALGHYKNWSVPDSLPYVKSYMKSIFSRESFAKTRALPEDVVAGWRPKNDLDRVLKYKAEANSTLRPRQSLHFPSLVFYKQRTE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2281418 2287082 + Maker00038908 Lcy12g0185 648248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0185 306 FunFam Glutathione S-transferase DHAR3, chloroplastic 151 272 - -
Lcy12g0185 306 FunFam Glutathione S-transferase DHAR3 chloroplastic 62 150 - -
Lcy12g0185 306 Gene3D Glutaredoxin 63 150 - -
Lcy12g0185 306 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 71 149 IPR004045 -
Lcy12g0185 306 SFLD Main (cytGST) 80 247 - -
Lcy12g0185 306 SUPERFAMILY GST C-terminal domain-like 144 268 IPR036282 -
Lcy12g0185 306 CDD GST_N_family 81 142 - -
Lcy12g0185 306 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 127 273 IPR010987 -
Lcy12g0185 306 Pfam Glutathione S-transferase, N-terminal domain 81 143 IPR004045 -
Lcy12g0185 306 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 64 270 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(InterPro)|GO:0045174(PANTHER)|GO:0098869(InterPro)
Lcy12g0185 306 SUPERFAMILY Thioredoxin-like 79 148 IPR036249 -
Lcy12g0185 306 CDD GST_C_DHAR 150 270 - -
Lcy12g0185 306 Gene3D - 151 272 - -
Lcy12g0185 306 SFLD Glutathione Transferase (cytosolic) 80 247 IPR040079 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0185 Lcy-Chr12:2281418 Lcy7g0839 Lcy-Chr7:8278948 2.22E-93 dispersed
Lcy12g0185 Lcy-Chr12:2281418 Lcy12g1111 Lcy-Chr12:21109465 3.86E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0185 K21888 - csv:101203335 499.204