Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0196 ATGGAGTTCCCCAATTGGTTCCGGCGAGGATTTTTGACGGTGGTGGTTCTGGGTTTGGCCTTTCTGGCTTCTGTCCGCCCGGATCTGGCCTCCGACAGGGCGGCGCTGGTGGGTTTCCGGGCGGCGATGGGCGGGCGGCCCAGATTGGAGTGGAATCTCTCCGATGATTCTCCCTGTTCTTGGGCTGGTGTTAACTGTGACCGGAATGGGGTTTTTGAGCTTCGGCTTCCGGCAATGGGGCTTTCCGGTGAGCTTCCGGTGGGGCTTGGGAATTTGACGCAGTTGCAAACTCTGTCTCTGCGGTTTAATGCTCTGTCCGGTCGGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGGAATCTTTACTTGCAGGGGAACTCGTTTTCCGGCGAGATTCCGGCATTTCTGTTCGATTTGCAGAACTTGGTCCGGTTGAACATGGCGGACAACAATTTTTCAGGTGAGATTCCATCTGGGTTCAACAATTTGTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAGTTTACTGGAATTGTTCCTGATTTAAATCTCCCTCTTGCCCAATTTAATGTCTCGTTTAATCAATTGAATGGTTCGATTCCCTCGAAGCTCTCTGGCTTTCCGGCCAGTGCTTTTGAGGGGAATTTGCTCTGTGGGGCGCCATTGCTGCTCTGCAACTCGACCGCCCCCGAGCCCGGTCGAAAGTCGAAGCTCTCAGGCGGGGCGATTGCCGGAATTGTGATTGGTGGTTTGTTTTTGTTGGTGTTGATTTTGGTTGTTCTGATTCTTGTCTGTCAAAGAAAGAGTAAGGGTAAATCGGAGTCGAAAGAGGGGGTTCGGCCAGGCGGCGGTCAGGCTGAGGTGTCAGGGGATAAGACGGCGGCGGCGGAGAGTAGCGAAAGCATAAATGTAGATCATTTGACTGCGCCGAAGTCGGCGTCGGGGAAGGGCAGTGAGAGGGATAAGAGATTGGTGTTCTTTGGGAATGTGGGGAATGTGTTTGATTTGGAGGATTTGTTGAGGGCGTCGGCGGAGGTTCTTGGGAAGGGGACGTTCGGGACGGCGTATAAGGCGACGTTGGAGACGGGGATGGTCGTCGCCGTGAAGCGGTTGAAGGAGATGACGGCGGCGGAGAAGGAGTTCAGGGAGAAGATGGAGGAGGTGGGGAGGATGAAGCATGAGAATTTGGTCTCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAACTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGAAGTAGAGAGTCAGGAAGGACTCCGTTGAATTGGGAAGCAAGGACTGGCATTGCTCTCGGAGTTGCTCGTGGGATTCATTACCTTCATTCTCAAGGCCCCACCATTTCTCATGGCAACATCAAGTCCTCAAACGTTCTCCTCACTCGATCATTCGAAGGTTGTGTATCCGACTTTGGCCTTGCACAACTGGCAATTTCACCCTCAGCTCCAAGTCGTGTCGCTGGGTATCGAGCCCCAGAGGTCACTGATTCTCGAAAGGTATCACAGAAGGCAGACATCTATAGCTTTGGAGTGTTATTATTGGAGGTGCTAACAGGAAAAGCTCCTACACATTCTATCTTGAACGAGGAAGGTGTTGACCTTCCTAGATGGGTTCAATCGGTGGTTCAAGAGGAATGGACAGCAGAAGTGTTTGATGAAGAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCCTGGAACTTGCTTTGCAATGTACAGTCCCATATCCCGACAACCGTCCGGAAATGGAGGAGGTCGTCCGACGAATCAAAGAACTTTGTGAATCGACCTCACAAAAACAAAGTGAGACAATTGACAATGATGGAAACAATGGTATTTCCACACAGTTTCATTCAGTAAGCTCAGACGATCCACCATCTACA 1941 50.49 MEFPNWFRRGFLTVVVLGLAFLASVRPDLASDRAALVGFRAAMGGRPRLEWNLSDDSPCSWAGVNCDRNGVFELRLPAMGLSGELPVGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNSFSGEIPAFLFDLQNLVRLNMADNNFSGEIPSGFNNLSRLATLYLQNNQFTGIVPDLNLPLAQFNVSFNQLNGSIPSKLSGFPASAFEGNLLCGAPLLLCNSTAPEPGRKSKLSGGAIAGIVIGGLFLLVLILVVLILVCQRKSKGKSESKEGVRPGGGQAEVSGDKTAAAESSESINVDHLTAPKSASGKGSERDKRLVFFGNVGNVFDLEDLLRASAEVLGKGTFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGRMKHENLVSLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARTGIALGVARGIHYLHSQGPTISHGNIKSSNVLLTRSFEGCVSDFGLAQLAISPSAPSRVAGYRAPEVTDSRKVSQKADIYSFGVLLLEVLTGKAPTHSILNEEGVDLPRWVQSVVQEEWTAEVFDEELLRYQNVEEEMVQLLELALQCTVPYPDNRPEMEEVVRRIKELCESTSQKQSETIDNDGNNGISTQFHSVSSDDPPST 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2415569 2418048 - Maker00038709 Lcy12g0196 648259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0196 647 Gene3D Phosphorylase Kinase; domain 1 314 417 - -
Lcy12g0196 647 CDD STKc_IRAK 349 612 - -
Lcy12g0196 647 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524(InterPro)
Lcy12g0196 647 FunFam Probable inactive receptor kinase RLK902 29 185 - -
Lcy12g0196 647 Pfam Leucine Rich Repeat 119 139 IPR001611 GO:0005515(InterPro)
Lcy12g0196 647 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Lcy12g0196 647 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Lcy12g0196 647 Gene3D Ribonuclease Inhibitor 29 221 IPR032675 -
Lcy12g0196 647 Pfam Protein tyrosine and serine/threonine kinase 347 608 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0196 647 FunFam Probable inactive receptor kinase At1g48480 418 620 - -
Lcy12g0196 647 ProSiteProfiles Protein kinase domain profile. 343 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0196 647 MobiDBLite consensus disorder prediction 616 647 - -
Lcy12g0196 647 SUPERFAMILY L domain-like 50 209 - -
Lcy12g0196 647 Gene3D Transferase(Phosphotransferase) domain 1 418 636 - -
Lcy12g0196 647 PANTHER OS05G0588300 PROTEIN 9 617 IPR050994 -
Lcy12g0196 647 MobiDBLite consensus disorder prediction 294 310 - -
Lcy12g0196 647 Coils Coil 376 396 - -
Lcy12g0196 647 SMART LRR_typ_2 164 187 IPR003591 -
Lcy12g0196 647 SMART LRR_typ_2 92 115 IPR003591 -
Lcy12g0196 647 SMART LRR_typ_2 116 140 IPR003591 -
Lcy12g0196 647 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Lcy12g0196 647 MobiDBLite consensus disorder prediction 275 319 - -
Lcy12g0196 647 SUPERFAMILY Protein kinase-like (PK-like) 347 608 IPR011009 -
Lcy12g0196 647 FunFam pollen receptor-like kinase 1 312 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0196 Lcy-Chr12:2415569 Lcy5g2369 Lcy-Chr5:46513497 2.31E-201 dispersed
Lcy10g1113 Lcy-Chr10:33488869 Lcy12g0196 Lcy-Chr12:2415569 3.59E-160 transposed
Lcy10g1468 Lcy-Chr10:38633280 Lcy12g0196 Lcy-Chr12:2415569 1.20E-58 wgd
Lcy12g0196 Lcy-Chr12:2415569 Lcy7g1283 Lcy-Chr7:16925236 3.29E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65486 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0196 - - - 0.0