Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0211 ATGGAGAATTTGATGGGTCTTCTGAGAATCCATGTTTCTAGAGGTGTCAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTGTCAAGATGGGCAAACAGAAGTTGAAGACTCGAGTGGTGAAACAAAATATAAACCCGGAGTGGAACGAAGATCTAACTCTATCGATCCAAGATCCGAATCTTCCGGTCTACCTGATCGTATACGACAAGGACTTGTTCTCACTAGACGACAGGATGGGGGACGCAGAGTTTGACGTTCGTCCATTCATGGAAGCTGTGAAGATGAGGCTGAACAATCTCCCAAGTGGAACAGTCATTAGAAAGATTCAACCAAACAGGGAAAATTGCCTGTCTGAAGAAAGTTGCATTGTTTGGGCAAATGGACAAGTTGTTCAGAAAATGTTTCTTAGGCTAAGAAATGTTGAGTCTGGTGAAGTTGAGCTCGAGTTGAAATGGATCGATATTCCTGGTTCAAGGGGATTGTAG 498 42.57 MENLMGLLRIHVSRGVNLAVRDVVSSDPYVIVKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNLPVYLIVYDKDLFSLDDRMGDAEFDVRPFMEAVKMRLNNLPSGTVIRKIQPNRENCLSEESCIVWANGQVVQKMFLRLRNVESGEVELELKWIDIPGSRGL 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2651305 2652956 + Maker00038499 Lcy12g0211 648274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0211 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lcy12g0211 165 Gene3D C2 domain 4 160 IPR035892 -
Lcy12g0211 165 Pfam C2 domain 6 93 IPR000008 -
Lcy12g0211 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 102 IPR035892 -
Lcy12g0211 165 SMART C2_3c 7 102 IPR000008 -
Lcy12g0211 165 CDD C2_ArfGAP 6 148 - -
Lcy12g0211 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0211 Lcy-Chr12:2651305 Lcy2g0383 Lcy-Chr2:3172026 2.51E-82 dispersed
Lcy10g1388 Lcy-Chr10:37243195 Lcy12g0211 Lcy-Chr12:2651305 1.05E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0211 - - - 0.0