Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0227 | ATGGCGACGAAGATCGACGGAAACGAAGAGGAAGAAGTTTCAAAGCTCGAAGAAGGCACTCTCGTTGCCGCTGCCGCCGTCGCCTGTCCCTGTCCCTCTCCCTCTCCCTCACCTTTAGTCCTTACCATTCAAAAGGTTATGGCGGAAGTGATCGGAACGTACTTCGTGATCTTCACCGGATGTGGATCGGTGGTGGTGAACAAAATCTACGGATCGGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGCAATGGTGTATACGGTGGGACATATCTCTGGAGCGCACTTCAACCCTGCTGTTACCATCACCTTCGCCATTTTTCGTCGCTTCCCCTTCTGGCAGGTTCCAATTTACATAGTAGCTCAAGTATTAGGGTCCCTTCTCGCAAGCTGCACATTGGATCTAATGTTTGAAGTGACCCCCGAAAACTTCTTTGGGACAGTGCCTGCTGGATCTAATATCCAATCTTTGGTTATTGAAATCATCATCACATTCCTCTTGATGTTTGTCATCTCTGGCGTCGGCACTGACAACAGATCTGGAGATCCCTACATACTGGTAGGAGAATTGGCAGGAGTTGTTGTCGGAATGACCATTCTCTTAAATGTTTTTGTCGCCGGGCCAATTTCGGGAGCTTCCATGAATCCAGCTAGGAGCATTGGACCAGCGATAGTGAAGCGACAATTCAAAGGATTATGGGTTTACATCATAGGACCATTGATCGGAGCAATTGCTGGAGCATTTGTCTATAACCTAATGAGATTCACAGACAAGCCACTGAGTGAGATCACCAGAAGCAGCTCATTCTTCATCGGTAGCCAGAAATCATAA | 846 | 47.75 | MATKIDGNEEEEVSKLEEGTLVAAAAVACPCPSPSPSPLVLTIQKVMAEVIGTYFVIFTGCGSVVVNKIYGSVTFPGICVVWGLIVMAMVYTVGHISGAHFNPAVTITFAIFRRFPFWQVPIYIVAQVLGSLLASCTLDLMFEVTPENFFGTVPAGSNIQSLVIEIIITFLLMFVISGVGTDNRSGDPYILVGELAGVVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIIGPLIGAIAGAFVYNLMRFTDKPLSEITRSSSFFIGSQKS | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2804298 | 2808478 | + | Maker00038931 | Lcy12g0227 | 648290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0227 | 281 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 29 | - | - | |
Lcy12g0227 | 281 | CDD | MIP | 44 | 258 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | Pfam | Major intrinsic protein | 42 | 255 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | SUPERFAMILY | Aquaporin-like | 42 | 267 | IPR023271 | - | |
Lcy12g0227 | 281 | PRINTS | Major intrinsic protein family signature | 201 | 223 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | PRINTS | Major intrinsic protein family signature | 238 | 258 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | PRINTS | Major intrinsic protein family signature | 44 | 63 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | PRINTS | Major intrinsic protein family signature | 119 | 138 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | PRINTS | Major intrinsic protein family signature | 164 | 182 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | PRINTS | Major intrinsic protein family signature | 82 | 106 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | PANTHER | AQUAPORIN NIP2-1 | 40 | 263 | IPR034294 | - | |
Lcy12g0227 | 281 | NCBIfam | MIP family channel protein | 48 | 255 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy12g0227 | 281 | ProSitePatterns | MIP family signature. | 100 | 108 | IPR022357 | - | |
Lcy12g0227 | 281 | Gene3D | Glycerol uptake facilitator protein. | 33 | 269 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0227 | Lcy-Chr12:2804298 | Lcy1g0246 | Lcy-Chr1:2212111 | 6.13E-104 | dispersed | |
Lcy12g0227 | Lcy-Chr12:2804298 | Lcy10g0489 | Lcy-Chr10:12294132 | 4.74E-62 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0227 | K09874 | - | csv:101215315 | 432.18 |