Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0227 ATGGCGACGAAGATCGACGGAAACGAAGAGGAAGAAGTTTCAAAGCTCGAAGAAGGCACTCTCGTTGCCGCTGCCGCCGTCGCCTGTCCCTGTCCCTCTCCCTCTCCCTCACCTTTAGTCCTTACCATTCAAAAGGTTATGGCGGAAGTGATCGGAACGTACTTCGTGATCTTCACCGGATGTGGATCGGTGGTGGTGAACAAAATCTACGGATCGGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGCAATGGTGTATACGGTGGGACATATCTCTGGAGCGCACTTCAACCCTGCTGTTACCATCACCTTCGCCATTTTTCGTCGCTTCCCCTTCTGGCAGGTTCCAATTTACATAGTAGCTCAAGTATTAGGGTCCCTTCTCGCAAGCTGCACATTGGATCTAATGTTTGAAGTGACCCCCGAAAACTTCTTTGGGACAGTGCCTGCTGGATCTAATATCCAATCTTTGGTTATTGAAATCATCATCACATTCCTCTTGATGTTTGTCATCTCTGGCGTCGGCACTGACAACAGATCTGGAGATCCCTACATACTGGTAGGAGAATTGGCAGGAGTTGTTGTCGGAATGACCATTCTCTTAAATGTTTTTGTCGCCGGGCCAATTTCGGGAGCTTCCATGAATCCAGCTAGGAGCATTGGACCAGCGATAGTGAAGCGACAATTCAAAGGATTATGGGTTTACATCATAGGACCATTGATCGGAGCAATTGCTGGAGCATTTGTCTATAACCTAATGAGATTCACAGACAAGCCACTGAGTGAGATCACCAGAAGCAGCTCATTCTTCATCGGTAGCCAGAAATCATAA 846 47.75 MATKIDGNEEEEVSKLEEGTLVAAAAVACPCPSPSPSPLVLTIQKVMAEVIGTYFVIFTGCGSVVVNKIYGSVTFPGICVVWGLIVMAMVYTVGHISGAHFNPAVTITFAIFRRFPFWQVPIYIVAQVLGSLLASCTLDLMFEVTPENFFGTVPAGSNIQSLVIEIIITFLLMFVISGVGTDNRSGDPYILVGELAGVVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIIGPLIGAIAGAFVYNLMRFTDKPLSEITRSSSFFIGSQKS 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2804298 2808478 + Maker00038931 Lcy12g0227 648290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0227 281 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Lcy12g0227 281 CDD MIP 44 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 Pfam Major intrinsic protein 42 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 SUPERFAMILY Aquaporin-like 42 267 IPR023271 -
Lcy12g0227 281 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 PANTHER AQUAPORIN NIP2-1 40 263 IPR034294 -
Lcy12g0227 281 NCBIfam MIP family channel protein 48 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0227 281 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Lcy12g0227 281 Gene3D Glycerol uptake facilitator protein. 33 269 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0227 Lcy-Chr12:2804298 Lcy1g0246 Lcy-Chr1:2212111 6.13E-104 dispersed
Lcy12g0227 Lcy-Chr12:2804298 Lcy10g0489 Lcy-Chr10:12294132 4.74E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0227 K09874 - csv:101215315 432.18