Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0279 ATGAGGGCTCCTAGAATGAGATGGACTAGCTCCTTACATGCTCGCTTCGTTCACGCCGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAATCAGTTCTTGAGCTGATGGATGTGAAGGATCTAACACTGGCTCATGTCAAAAGCCATTTACAGATGTATCGGACTGTTAAGACCACTGACAAGCCTGCAGCTTCCTCAGGCCAATCAGACGGTTCTGGGGAGGACGATGTGTCTCCTACGATAGGCACGACCATAGGGGATCATGGCCCAAGGCAGTTCTCCGACCAAAGAGCTCCGTCGGACCGGTCCGGCCAACCGCCGCCGGATTTGGAATTTGGCTCCACCACTCTTTGGTCTAACTCTTCAAGAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATGTCATTAGACCAACTTCATCTACTCAAATCCAACAAAAATCCATGCACCAAATTGAGGAATGTGATTCAGGTGCAATGAAGAGATACAATAACAACAATTCAGAATGCAAGAAACCAAGCTTGGAGTTCAGGTTAGGCAGAGCAGAGTGGGATGTCAAAGAAGACTAA 579 47.84 MRAPRMRWTSSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDVSPTIGTTIGDHGPRQFSDQRAPSDRSGQPPPDLEFGSTTLWSNSSRDVWPQTNSNEMDVIRPTSSTQIQQKSMHQIEECDSGAMKRYNNNNSECKKPSLEFRLGRAEWDVKED 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3453243 3459594 + Maker00038584 Lcy12g0279 648342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0279 192 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 190 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Lcy12g0279 192 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lcy12g0279 192 MobiDBLite consensus disorder prediction 61 103 - -
Lcy12g0279 192 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lcy12g0279 192 NCBIfam myb-like DNA-binding domain, SHAQKYF class 4 57 IPR006447 GO:0003677(InterPro)
Lcy12g0279 192 Gene3D - 3 60 - -
Lcy12g0279 192 MobiDBLite consensus disorder prediction 61 132 - -
Lcy12g0279 192 FunFam Myb family transcription factor 2 60 - -
Lcy12g0279 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
Lcy12g0279 192 MobiDBLite consensus disorder prediction 111 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1119 Lcy-Chr10:33547208 Lcy12g0279 Lcy-Chr12:3453243 8.86E-45 dispersed
Lcy12g0279 Lcy-Chr12:3453243 Lcy5g2360 Lcy-Chr5:46438299 5.17E-36 dispersed
Lcy12g0279 Lcy-Chr12:3453243 Lcy12g1970 Lcy-Chr12:41078032 3.11E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19222 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0279 - - - 0.0