Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0300 ATGCTAAAGAGTGGGCTAAGTTTGTTTTCTTATCTTTTTTCTTTGTTTTTTTTTTTATTTTTCCTTCCTTCTTATGCTGTAAAATGCGTGTCTTTATTTTGCATATATATAGGAGGCTGCCTGTTCTTCTTCTTCTTCTTCTTCACAACTTCTAAGCCCATTGTATTTGGTCACTTAATTCAATTTTTTCTCTGCTTTTCTTCAGCAATGGCTAATCGGATCTCAGGTGTTTCAGAAGTGTCCCCGGCTTCCGTTCCCGACATGTCGTCCGATGTCGACGTAGAAGAAGAAGAAGTTGCGCCTTCTCTTTCTGATCTTCAGCCTCAAGAGAGGAAGCTCTCATGGCAAAAGCTCCGACGATGCGACTCCTTGGATTTAGAGTCTTGTAAACTCGATGGTCATCATCCTCATCATTCCGACGCCAAGAACAAGGAATGGAGCGTGATATTACAACTGGCATTCCAGAGCATCGGCATAGTCTACGGCGACATCGGAACGTCGCCGCTGTACGTCTACTCCAGCACGTTCCCGGACGGAATAAAGCACAACGACGACGTTTTAGGAGCGCTGTCTTTGATCTTCTACACCATAACTCTGCTTCCGGTCATCAAGTACGTGTTCATCGTTCTCAGAGCCAACGACAACGGAGAAGGCGGAACATTTGCGCTGTACTCTTTGATCTGTCGATACGCGAAATTAGGGCTAATTCCGAACGAACAGATTGAAGATCGAGATGTGTCGAATTACCAGTTGAGTTTGCCAAATGAGAGAGAGAAGAGAGCTTCGAAGATCCAGTCGAGGCTGGAGGAGAGCCATTTCGCGAAGGTGTTTCTTCTGTTTGCGACGATGCTTGGAACCTCCATGGTTATTGGCGATGGCGTTCTCACTCCTTGTATCTCAGTTTTATCTGCTGTGGGAGGGATCAAGGAAGCTAACCCTGAATTGACAGAAGGTACGATTGTTTGGGCATCAGTAGGGATATTGGTGTTTCTATTCATGGTTCAAAGATTTGGAACAGACAAAGTTGGCTACACTTTTGCTCCAATAATCTTCATTTGGTTTGGTTTCATCGGTGGGATCGGTGTTTACAACTTCATAAAATACGACCCATCTGTGATTAAGGCCTTAAATCCAATGTACATTGTTCATTACTTCCAAAGGAACAAAAAGGATGCTTGGATCTCTCTTGGTGGCACTGTTCTTTCCATTACAGGAATCGAAGCGTTGTTCGCCGACGTCGGACATTTCAACGTGCGATCGATCCAGCTAAGCATGTCGGCAGTGACCTACCCAGCTCTAATCTGTGCATATGTAGGCCAAGCCTCCTTTCTTCGCAAGCATAACGATCTAGTTTCAGACACATTCTACAAGTCAATTCCTGGAAGTCTGTATTGGCCAATGTTTGTGTTGGCAGTTTCAGCATCAATCATAGCAAGCCAAGCAATGATCTCAGGAACTTTCTCTATAATTCAACAGTCAATTTCACTTGGATGCTTCCCTACAGTTAAAGTGGTTCACACATCTGCTAAGTATGAAGGCCAAGTTTATGTTCCTGAGATCAATTACCTTCTCATGTTGGCTTGTATTGGTGTCACTTTGGGCTTCAAGAACACTACAAAGATTGGCAATGCATATGGAATAGCAGTGGTTTTTGTGATGACACTCACATCCTCGTTCCTAGTTCTGATAATGGTGATGATATGGAAAACTCACATCCTTTTCATAATCACTTACATCCTCATCATTGGTAGTGTTGAGTTGCTTTATCTGAGTTCAGTCCTTTACAAGTTCGATCAAGGAGGCTATCTCCCTCTGGCTTTTGCAGCTGTTTTGATGACTGTAATGTATGTCTGGAATAGTGTCTTTAGAAAAAAGTACTTTTATGAGCTAAGCCACAAAATCTCCTCAGAAAAGCTCAATGAGGTCGTCAATACCACCAGCTTTAGAAGAATTCCTGGCGTGGCACTGTTCTACTCTGAGCTTGTTCAAGGCATCCCACCCATCTTCAAGCATTACGTTGAGCACGTGCCTGCGTTGCACTCTGTGCTCGTCTTCGTCACCATTAAATCACTTCCCGTGAGCAAGGTTCCGGCCGAAAAACGTTTCCTCTTTCGTCAAGTAGAAGTCAAGGAGATTGATGTGTTTCGTTGTGTCGTTAGATATGGGTATGCAGACGTGCACGCCAAACAAGAATCTTTCGAGAAGATATTACTTGAGAGATTGGAGGAGTTCGAAAGAGACCAATGGAACAAATTGTCTGACGACGAAAATGGAGTTGACGGGAGAGTTGAAGGTGAAGATGAGAACGGATTTGGAGGAGTTGCAGAAGCATGGAAGGATGGAGTTGTTCATTTGATTGGGGAAACTGAGGTGGTTGCTCAAAAGGGAGCTAGCTTTGGAAAGAGGATTATGATAGACTATGCATATAGCTTCTTGAAGAGGAATTTGGGGAAAACTGATCAAGTGTTTGATATTCCTCACAAGCATATGCTCAAAGTAGGAATGACTTATGAACTTTAG 2520 43.45 MLKSGLSLFSYLFSLFFFLFFLPSYAVKCVSLFCIYIGGCLFFFFFFFTTSKPIVFGHLIQFFLCFSSAMANRISGVSEVSPASVPDMSSDVDVEEEEVAPSLSDLQPQERKLSWQKLRRCDSLDLESCKLDGHHPHHSDAKNKEWSVILQLAFQSIGIVYGDIGTSPLYVYSSTFPDGIKHNDDVLGALSLIFYTITLLPVIKYVFIVLRANDNGEGGTFALYSLICRYAKLGLIPNEQIEDRDVSNYQLSLPNEREKRASKIQSRLEESHFAKVFLLFATMLGTSMVIGDGVLTPCISVLSAVGGIKEANPELTEGTIVWASVGILVFLFMVQRFGTDKVGYTFAPIIFIWFGFIGGIGVYNFIKYDPSVIKALNPMYIVHYFQRNKKDAWISLGGTVLSITGIEALFADVGHFNVRSIQLSMSAVTYPALICAYVGQASFLRKHNDLVSDTFYKSIPGSLYWPMFVLAVSASIIASQAMISGTFSIIQQSISLGCFPTVKVVHTSAKYEGQVYVPEINYLLMLACIGVTLGFKNTTKIGNAYGIAVVFVMTLTSSFLVLIMVMIWKTHILFIITYILIIGSVELLYLSSVLYKFDQGGYLPLAFAAVLMTVMYVWNSVFRKKYFYELSHKISSEKLNEVVNTTSFRRIPGVALFYSELVQGIPPIFKHYVEHVPALHSVLVFVTIKSLPVSKVPAEKRFLFRQVEVKEIDVFRCVVRYGYADVHAKQESFEKILLERLEEFERDQWNKLSDDENGVDGRVEGEDENGFGGVAEAWKDGVVHLIGETEVVAQKGASFGKRIMIDYAYSFLKRNLGKTDQVFDIPHKHMLKVGMTYEL 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3671950 3699126 - Maker00038743 Lcy12g0300 648363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0300 839 Pfam K+ potassium transporter integral membrane domain 152 639 IPR053951 -
Lcy12g0300 839 Pfam K+ potassium transporter C-terminal domain 652 839 IPR053952 -
Lcy12g0300 839 NCBIfam potassium uptake protein 152 838 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy12g0300 839 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 138 838 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0300 Lcy-Chr12:3671950 Lcy12g0302 Lcy-Chr12:3716820 0 dispersed
Lcy12g0299 Lcy-Chr12:3662944 Lcy12g0300 Lcy-Chr12:3671950 0 tandem
Lcy12g0300 Lcy-Chr12:3671950 Lcy12g0301 Lcy-Chr12:3707833 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0300 K03549 - csv:101215797 1207.97