Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0301 ATGGCTAATCGGATCTCAGGTGTTTCACAAGTGTCCCCGGCTGACGTTCCCGACATGTCGTCCGATGTCGACGTAGAAGAAGAAGAAGAAGTTGCGCCTTCGTCTCTTTCTTCTCAAAAGCTCCGACGATACGACTCCTTGGATTTAGAGTCTCGAAAACTCGACGGTCATCATCCTCATCACTCCGACGCCAAGGTCTTCTCTATTAACTCTACATCTTTCTTTTCATTCTCCATTTCGTTAGCTCTTGATTGTGTATACATTTATGTCCAATGGCAGAACAAGAAATGGAGCGTGATATTACAACTGGCATTCCAGAGCATGGGCATAGTCTACGGCGACATCGGAACGTCGCCGCTGTACGTCTACTCCAGCACGTTCCCGGACGGAATAAAGCACAACGACGACGTTTTAGGAGCGCTGTCTTTGATCTTCTACACCATAACTCTGCTTCCGGTCATCAAGTACGTGTTCATCGTTCTCAGAGCCAACGACAACGGAGAAGGCGGAACATTTGCGCTGTACTCTTTGATCTGTCGATACGCGAAATTAGGGCTAATTCCGAACGAACAGATTGAAGATCGAGATGTGTCGAATTACCAGTTGAGTTTGCCAAATGAGAGAGAGAAGAGAGCTTCGAAGATCCAGTCGAGGCTGGAGGAGAGCCATTTCGCGAAGGTGTTTCTTCTGTTTGCGACGATGCTTGGAACCTCCATGGTTATTGGCGATGGCGTTCTCACTCCTTGTATCTCAGTTTTATCTGCTGTGGGAGGGATCAAGGAAGCTAACCCTGAATTGACAGAAGGTACGATTGTTTGGGCATCAGTAGGGATATTGGTGTTTCTATTCATGGTTCAAAGATTTGGAACAGACAAAGTTGGCTACACTTTTGCTCCAATAATCTTCATTTGGTTTGGTTTCATCGGTGGGATCGGTGTTTACAACTTCATAAAATACGACCCATCTGTGATTAAGGCCTTAAATCCAATGTACATTGTTCATTACTTCCAAAGGAACAAAAAGGATGCTTGGATCTCTCTTGGTGGCACTGTTCTTTCCATTACAGGAGCCGAAGCATTGTTTGCTGACGTTGGGCATTTCAGCGTGCGATCGATCCAACTAAGCATGTCAGCAGTGGCCTACCCAACTCTAGTCTGTGCATATGTAGGCCAAAGCTCCTTTCTTCGCAAGCATAACGATCTAGTTTCAGACACATTCTACAAGTCAATTCCTGGAAGTCTGTATTGGCCAATGTTTGTGTTGGCAGTTTCAGCATCAATCATAGCAAGCCAAGCAATGATCTCAGGAACTTTCTCTATAATTCAACAGTCAATTTCACTTGGATGCTTTCCTACAGTTAAAGTGGTTCACACATCTGCTAAGTATGAAGGCCAAGTTTATGTTCCTGAGATCAATTACCTTCTCATGTTGGCTTGTATTGGTGTCACTTGGGGCTTCAAGAACACTACAAAGATTGGCAATGCATATGGAATAGCAGTGGTTTTTGTGATGACACTCACATCCTCCTTCCTAGTTCTGATAATGGTGATGATATGGAAAACTCATATCCTTTTCATAATCACTTACATCCTCATCATTGGTAGTGTTGAATTGATTTATCTAAGTTCAGTCCTTTACAAGTTCGACCAAGGAGGCTATCTCCCTTTGGCTTTTGCAGCTGTTTTGATGACTGTAATGTATGTGTGGAATAGTGTCTTTAGGAAAAAGTACTTTTATGAGCTCAACCACAGAATCTCCTCAGAAAAGCTCAATGAGGTCGTCAATACCACCAGCTTTAGAAGAATTCCTGGCGTGGCATTGTTCTACTCTGACCTTGTTCAAGGCATCCCACCCATCTTCAGGCATTACGTCGAGCACGTGCCTGCGTTGCACTCTGTGCTCGTCTTCGTCACCATTAAATCGCTTCCTGTGAGCAAGGTTTTGGCCGAAGAACGTTTCCTCTTTCGTCAAGTAGAAGCCAAGAAGATTGACGTGTTTCGTTGCGTCGTTAGATACGGGTACGCAGACGTCCACACCGGACAAGAATCATTCGAGAGGATATTACTTGAGAGATTGGAGGAGTTCGAAAGAGAACAACAGAATAAATTGTCCAACAGCGAAAACGGAGACGACAAGAGAGTTGAAGGTGAAGATGAGAAAGGATTTGGAGGAGTTGCAAATGCATGGAAGGATGGAGTTGTTCACTTGATTGGGGAAACTGAGGTGGTTGCTCAAAAGGGAGCTAGCTTTGGAAAGAGGATTATGATAGACTATGCATATAGCTTCTTGAAGAGGAATTTGGGGAAAACTGATCAAGTGTTTGATATTCCTCACAAGCATATGCTCAAAGTAGGAATGATTTATGAACTTTAG 2373 43.99 MANRISGVSQVSPADVPDMSSDVDVEEEEEVAPSSLSSQKLRRYDSLDLESRKLDGHHPHHSDAKVFSINSTSFFSFSISLALDCVYIYVQWQNKKWSVILQLAFQSMGIVYGDIGTSPLYVYSSTFPDGIKHNDDVLGALSLIFYTITLLPVIKYVFIVLRANDNGEGGTFALYSLICRYAKLGLIPNEQIEDRDVSNYQLSLPNEREKRASKIQSRLEESHFAKVFLLFATMLGTSMVIGDGVLTPCISVLSAVGGIKEANPELTEGTIVWASVGILVFLFMVQRFGTDKVGYTFAPIIFIWFGFIGGIGVYNFIKYDPSVIKALNPMYIVHYFQRNKKDAWISLGGTVLSITGAEALFADVGHFSVRSIQLSMSAVAYPTLVCAYVGQSSFLRKHNDLVSDTFYKSIPGSLYWPMFVLAVSASIIASQAMISGTFSIIQQSISLGCFPTVKVVHTSAKYEGQVYVPEINYLLMLACIGVTWGFKNTTKIGNAYGIAVVFVMTLTSSFLVLIMVMIWKTHILFIITYILIIGSVELIYLSSVLYKFDQGGYLPLAFAAVLMTVMYVWNSVFRKKYFYELNHRISSEKLNEVVNTTSFRRIPGVALFYSDLVQGIPPIFRHYVEHVPALHSVLVFVTIKSLPVSKVLAEERFLFRQVEAKKIDVFRCVVRYGYADVHTGQESFERILLERLEEFEREQQNKLSNSENGDDKRVEGEDEKGFGGVANAWKDGVVHLIGETEVVAQKGASFGKRIMIDYAYSFLKRNLGKTDQVFDIPHKHMLKVGMIYEL 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3707833 3711956 - Maker00038967 Lcy12g0301 648364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0301 790 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 92 789 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy12g0301 790 MobiDBLite consensus disorder prediction 1 39 - -
Lcy12g0301 790 Pfam K+ potassium transporter integral membrane domain 103 590 IPR053951 -
Lcy12g0301 790 Pfam K+ potassium transporter C-terminal domain 603 790 IPR053952 -
Lcy12g0301 790 NCBIfam potassium uptake protein 103 789 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy12g0301 790 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0299 Lcy-Chr12:3662944 Lcy12g0301 Lcy-Chr12:3707833 0 dispersed
Lcy12g0301 Lcy-Chr12:3707833 Lcy3g1708 Lcy-Chr3:44390324 0 dispersed
Lcy12g0300 Lcy-Chr12:3671950 Lcy12g0301 Lcy-Chr12:3707833 0 tandem
Lcy12g0301 Lcy-Chr12:3707833 Lcy12g0302 Lcy-Chr12:3716820 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0301 K03549 - csv:101215797 1178.7