Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0302 ATGGCTAATCGGATCTCAGGTGTTTCAGAAGTGTCCCCGGCTTCCGTTCCCGACATGTCGTCCGATGTCGACGTAGAAAAAGAAGAAGTTGCGCCTTCTCTTTCTGATCTTCAGCCTCAAGAGAGGAAGCTCTCATGGCAAAAGCTCCGACGATACGACTCTTTGGATTTAGAGTCTCGTAAACTCGACGGTCATCATCCTCATCATTCCGACGCCAAGAACAAGGAATGGAGCGTGATATTACAACTGGCATTCCAGAGCATCGGCATAGTCTACGGCGACATCGGAACGTCGCCGCTGTACGTCTACTCCAGCACGTTCCCGGACGGAATAAAGCACAACGACGACGTTTTAGGAGCGCTGTCTTTGATCTTCTACACCATAACTCTCATTCCGGTCATCAAGTACGTGTTCATCGTTCTCAGAGCCAACGACAACGGAGAAGGCGGAACGTTTGCGCTGTACTCTTTGATCTGTCGATACGCGAAATTAGGGCTAATTCCGAACGAACAGATTGAAGATCGAGATGTGTCGAATTACCAGTTGAGTTTGCCGAATGAGAGAGAGAAGAGAGCTTCGAAGATCCAGTCGAGGCTGGAGAAGAGCCATTTCGCGAAGGTGTTTCTTCTGTTTGCGACGATGCTTGGAACCTCCATGGTTATCGGCGATGGCGTTCTCACTCCTTGTATCTCAGTTTTATCTGCTGTGGGAGGGATCAAGGAAGCTACCCCTGCAATGACAGAAGGTAGGATTGTTTGGGTATCAGTAGGGATATTGGTGTGCCTGTTCATGGTTCAAAGATTTGGAACAGACAAAGTTGGCTACACTTTTGCTCCAATAATCTTCATTTGGTTTGCTTTCATCGCTGGGATCGGTGTTTACAACTTCATAAAATACGACCCATCTGTGATTAAGGCCTTAAATCCAATGTACATTGTTCATTACTTCCAAAGGAACAACAAGGATGCTTGGATCTCTCTTGGTGGCATTGTTCTTTCCGTTACAGGAACCGAAGCGTTGTTCGCCGACGTCGGGCATTTCAGCGTGCGATCGATCCAACTAAGCATGTCAGCAGTGGCCTACCCAACTCTAGTCTGTGCATATGTAGGCCAAAGCTCCTTTCTTCGCAAGCATAACGATCTAGTTTCAGACACATTCTACAAGTCAATTCCTGGAAGTTTGTATTGGCCAATGTTTGTGTTGGCAGTTTCAGCATCAATCATAGCAAGCCAAGCAATGATCTCAGGAACTTTCTCTATAATTCAACAGTCAATTTCACTTGGATGCTTCCCTAGAGTTAAAGTGGTTCACACATCTGCTAAGTATGAAGGCCAAGTTTATGTTCCTGAGATCAATTACCTTCTCATGTTGGCTTGTGTTGGTGTCACTTTGGGCTTCAAGAACACTACAAAGATTGGCAATGCATATGGAATAGCAGTGGTTTTTGTGATGACACTCACATCCTCCTTCCTAGTTTTGATAATGGTGATGATATGGAAAACTCACATCCTTTTCATAATCACTTACATCCTCATCATTGGTAGTGTTGAATTGCTTTATCTGAGTTCAGTCCTTTACAAGTTCGACCAAGGAGGCTATCTCCCTCTGGCTTTTGCAGCTGTTTTGATGACTGTAATGTATGTGTGGAATAGTGTCTTTAGAAAAAAGTACTTTTATGAGCTCAGCCACAAAATCTCCTCAGAAAAGCTCAATGAGGTCGTCAATACTACCAGCTTTAGAAGAATTCCTGGCGTGGCACTGTTCTACTCTGAGCTTGTTCAAGGCATCCCACCCATCTTCAAGCATTACGTCGAGCACGTGCCTGCGTTGCACTCTGTGCTCGTCTTCGTCACCATTAAATCACTTCCCGTGAGCAAGGTTCCGGCTGAAGAACGTTTCCTCTTTCGTCAAGTAGAGGCCAAGGAGATTGACGTGTTTCGTTGTGTCGTTAGATACGGGTACGCAGACGTGCACACAGAACAAGAATCATTCGAGAGGATATTACTTGAGAGATTGGAGGAGTTCGAAAGAGAACAATGGAATAAATTGTCTAACAGCGAAAACGGAGTCGACAAAAGAGTTGAAGGTGAAGATGAGAAAGGATTTGGAGGAGTTGCAGAAGCATGGAAGGATGGAGTTGTTCATTTGATTGGGGAAACTGAGGTGGTTGCTCAAAAGGGAGCTGGCTTTGGAAAGAGGATTATGATAAACTATGCATATAGTTTCTTGAAGAGGAATTTGAGGCAAACTGATCAAGTGTTTGATATTCCTCACAAGCATATGCTCAAAGTAGGAATGACTTATGAACTTTAG 2313 44.7 MANRISGVSEVSPASVPDMSSDVDVEKEEVAPSLSDLQPQERKLSWQKLRRYDSLDLESRKLDGHHPHHSDAKNKEWSVILQLAFQSIGIVYGDIGTSPLYVYSSTFPDGIKHNDDVLGALSLIFYTITLIPVIKYVFIVLRANDNGEGGTFALYSLICRYAKLGLIPNEQIEDRDVSNYQLSLPNEREKRASKIQSRLEKSHFAKVFLLFATMLGTSMVIGDGVLTPCISVLSAVGGIKEATPAMTEGRIVWVSVGILVCLFMVQRFGTDKVGYTFAPIIFIWFAFIAGIGVYNFIKYDPSVIKALNPMYIVHYFQRNNKDAWISLGGIVLSVTGTEALFADVGHFSVRSIQLSMSAVAYPTLVCAYVGQSSFLRKHNDLVSDTFYKSIPGSLYWPMFVLAVSASIIASQAMISGTFSIIQQSISLGCFPRVKVVHTSAKYEGQVYVPEINYLLMLACVGVTLGFKNTTKIGNAYGIAVVFVMTLTSSFLVLIMVMIWKTHILFIITYILIIGSVELLYLSSVLYKFDQGGYLPLAFAAVLMTVMYVWNSVFRKKYFYELSHKISSEKLNEVVNTTSFRRIPGVALFYSELVQGIPPIFKHYVEHVPALHSVLVFVTIKSLPVSKVPAEERFLFRQVEAKEIDVFRCVVRYGYADVHTEQESFERILLERLEEFEREQWNKLSNSENGVDKRVEGEDEKGFGGVAEAWKDGVVHLIGETEVVAQKGAGFGKRIMINYAYSFLKRNLRQTDQVFDIPHKHMLKVGMTYEL 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3716820 3725214 - Maker00038480 Lcy12g0302 648365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0302 770 Pfam K+ potassium transporter C-terminal domain 583 770 IPR053952 -
Lcy12g0302 770 NCBIfam potassium uptake protein 83 769 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy12g0302 770 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 69 769 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy12g0302 770 MobiDBLite consensus disorder prediction 1 38 - -
Lcy12g0302 770 MobiDBLite consensus disorder prediction 1 16 - -
Lcy12g0302 770 Pfam K+ potassium transporter integral membrane domain 83 570 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0921 Lcy-Chr11:27668715 Lcy12g0302 Lcy-Chr12:3716820 6.19E-292 dispersed
Lcy12g0300 Lcy-Chr12:3671950 Lcy12g0302 Lcy-Chr12:3716820 0 dispersed
Lcy12g0302 Lcy-Chr12:3716820 Lcy3g1709 Lcy-Chr3:44404725 0 dispersed
Lcy12g0301 Lcy-Chr12:3707833 Lcy12g0302 Lcy-Chr12:3716820 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0302 K03549 - csv:101215797 1250.34