Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0363 CTTCTGCTTCTTGGGTTTCGCTTCGATTCCCTTTTCGGTGATGTTACTTCTCCGCTTTGGTCATTATCTGACTCGTCGGTGATGTCGGTGCCTGCGGCTTCCGTCGCTGCGGGTATATTGAAACAGGTCTCTTGCCGGTTTCCAAAGCAGTTCATTTTATTATGGTTTGTGATTTCCTTCACCAATGCCTACGTTCCCGATATACCAGCAGCACCTCTGGTTGCACCTGCTGTCCACAATATGCCTTTTCCTGCCAAATTTCCTCTTCACCAACACCACCACCGGAAATATATGTCACCACAGAGTGCGCCAGCAGCTGGACTAGCACCAGCATCTCCTCCTTACTATGGGCCTCTTATCACTTCTGGTCACCCGCCCACAAGTTCAAGTTTTTCAAAACCATTGATGAAGAGTGGATCAGCTCCTCCTGATGGTAGGCTTGAAAACATTGCTCCCATACAGTCCAGTGCTGGTGCTATTCCCTCTGGGTTACCTCAGCCACCACTTTCTCCTAATGCAGCAGACTGTTGCAAACCTGACATGGTGCTGAAACGAGGAAGTGGTGATGACTGCCATTGTGTCTACCCCATAAAAATTGATCTCCTCCTCTTGAATGTATCACAGAATCCTAATTGGAAACTTTTTCTCGAAGAGTTAGCATCTGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGCTTATCTAGGTTAAATATCTCAATGGACATTACTCCACATGCTGGGATCAGCTTTTCCGCAGTTGATGCATCTGCAATAAACTCTTCACTTACAATGCACAAGGTTCATCTAGACCCTACACTGGTGGGTGATTACAATCTTCTCAATATCACCTGGTTTAAGCCTCCGCCTCCTTCTCAAGCTCCTATAGCTTCTGCATCACCTGTAGCAGCTCCAACATATCATTTTCCAGCCTCAACATCATTGAGTCCTCCTAGTAAAGAACACCATTCCAATCTGACGCTTCTTCTTGGCATTGGTGCTGGTTTTCTTTTCATTGCCATTCTATTTGTGTTGATAATTTGTTTATGCACATCTCATCGTGGGAAGAATGAAGCACCTGCATTAGTAGCTGAAAAACCAAGGGTTGAAGACAAAGTGCCTATGGTAGGATCGTTCCCTCATCCATCAAGTATGAGATTTCTTACTTATGAAGAGCTTAAAGAGGCAACTAATAACTTTGAAGCAGCGAGCATCTTGGGGGAGGGTGGTTTTGGCAGGGTTTTTAAGGGCGTCTTAAGTGATGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGCGACAAGGAGTTTTTGGTCGAGGTCGAGATGCTTAGTCGGTTGCATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGACTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTCTAGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTGGATGCTGCTCGAGGACTTGCTTACCTTCATGAAGACTCGCAACCTTGTGTTATCCATAGAGACTTTAAAGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAGGTTGCTGACTTCGGTCTGGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGGTATGTCGCTCCCGAGTATGCAATGACTGGTCATCTACTTGTTAAAAGTGATGTTTATAGCTATGGAGTTGTTCTTCTTGAGTTGCTCACGGGAAGGAAACCTGTAGATATGTCACAACCATCAGGACAGGAGAACCTGGTCACATGGGCTAGGCCAATTTTGAGAGACAAGGATCGGTTGGAAGAACTTGCTGATCCACGACTTGGAGGAAAATATCCGAAGGAAGATTTCGTGCGGGTGTGTACCATTGCTGCCGCGTGTGTCGCTCCCGAGGCTGGCCAACGCCCAACAATGGGCGAAGTTGTACAGTCTCTTAAAATGGTGCAGCGTGTTACAGAATACCAAGACTCCATGGTACCATCCTCCAACAACCGACCCAATCTTAGACAGTCGTCCACGACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCTGAAGATCTTCACGAGGGACGATGA 2253 45.72 LLLLGFRFDSLFGDVTSPLWSLSDSSVMSVPAASVAAGILKQVSCRFPKQFILLWFVISFTNAYVPDIPAAPLVAPAVHNMPFPAKFPLHQHHHRKYMSPQSAPAAGLAPASPPYYGPLITSGHPPTSSSFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPNAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASAINSSLTMHKVHLDPTLVGDYNLLNITWFKPPPPSQAPIASASPVAAPTYHFPASTSLSPPSKEHHSNLTLLLGIGAGFLFIAILFVLIICLCTSHRGKNEAPALVAEKPRVEDKVPMVGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSMVPSSNNRPNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4411712 4417498 - Maker00038498 Lcy12g0363 648426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0363 750 Gene3D Phosphorylase Kinase; domain 1 387 483 - -
Lcy12g0363 750 Gene3D Transferase(Phosphotransferase) domain 1 484 703 - -
Lcy12g0363 750 MobiDBLite consensus disorder prediction 124 144 - -
Lcy12g0363 750 SUPERFAMILY Protein kinase-like (PK-like) 379 683 IPR011009 -
Lcy12g0363 750 Pfam Protein tyrosine and serine/threonine kinase 409 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0363 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0363 750 ProSitePatterns Protein kinases ATP-binding region signature. 412 434 IPR017441 GO:0005524(InterPro)
Lcy12g0363 750 FunFam Receptor-like serine/threonine-protein kinase ALE2 386 483 - -
Lcy12g0363 750 ProSiteProfiles Protein kinase domain profile. 406 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0363 750 CDD STKc_IRAK 412 682 - -
Lcy12g0363 750 FunFam Receptor-like serine/threonine-protein kinase ALE2 484 700 - -
Lcy12g0363 750 PANTHER OS01G0750732 PROTEIN 175 724 IPR050885 -
Lcy12g0363 750 MobiDBLite consensus disorder prediction 691 730 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0875 Lcy-Chr11:25989704 Lcy12g0363 Lcy-Chr12:4411712 6.01E-72 dispersed
Lcy12g0363 Lcy-Chr12:4411712 Lcy12g2069 Lcy-Chr12:42064622 1.46E-121 dispersed
Lcy12g0393 Lcy-Chr12:4806527 Lcy12g0363 Lcy-Chr12:4411712 1.05E-84 dispersed
Lcy2g0919 Lcy-Chr2:8443882 Lcy12g0363 Lcy-Chr12:4411712 1.04E-37 dispersed
Lcy8g1913 Lcy-Chr8:45392921 Lcy12g0363 Lcy-Chr12:4411712 3.25E-70 dispersed
Lcy12g0363 Lcy-Chr12:4411712 Lcy3g2215 Lcy-Chr3:48994991 5.49E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65487 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0363 - - - 0.0