Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0363 | CTTCTGCTTCTTGGGTTTCGCTTCGATTCCCTTTTCGGTGATGTTACTTCTCCGCTTTGGTCATTATCTGACTCGTCGGTGATGTCGGTGCCTGCGGCTTCCGTCGCTGCGGGTATATTGAAACAGGTCTCTTGCCGGTTTCCAAAGCAGTTCATTTTATTATGGTTTGTGATTTCCTTCACCAATGCCTACGTTCCCGATATACCAGCAGCACCTCTGGTTGCACCTGCTGTCCACAATATGCCTTTTCCTGCCAAATTTCCTCTTCACCAACACCACCACCGGAAATATATGTCACCACAGAGTGCGCCAGCAGCTGGACTAGCACCAGCATCTCCTCCTTACTATGGGCCTCTTATCACTTCTGGTCACCCGCCCACAAGTTCAAGTTTTTCAAAACCATTGATGAAGAGTGGATCAGCTCCTCCTGATGGTAGGCTTGAAAACATTGCTCCCATACAGTCCAGTGCTGGTGCTATTCCCTCTGGGTTACCTCAGCCACCACTTTCTCCTAATGCAGCAGACTGTTGCAAACCTGACATGGTGCTGAAACGAGGAAGTGGTGATGACTGCCATTGTGTCTACCCCATAAAAATTGATCTCCTCCTCTTGAATGTATCACAGAATCCTAATTGGAAACTTTTTCTCGAAGAGTTAGCATCTGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGCTTATCTAGGTTAAATATCTCAATGGACATTACTCCACATGCTGGGATCAGCTTTTCCGCAGTTGATGCATCTGCAATAAACTCTTCACTTACAATGCACAAGGTTCATCTAGACCCTACACTGGTGGGTGATTACAATCTTCTCAATATCACCTGGTTTAAGCCTCCGCCTCCTTCTCAAGCTCCTATAGCTTCTGCATCACCTGTAGCAGCTCCAACATATCATTTTCCAGCCTCAACATCATTGAGTCCTCCTAGTAAAGAACACCATTCCAATCTGACGCTTCTTCTTGGCATTGGTGCTGGTTTTCTTTTCATTGCCATTCTATTTGTGTTGATAATTTGTTTATGCACATCTCATCGTGGGAAGAATGAAGCACCTGCATTAGTAGCTGAAAAACCAAGGGTTGAAGACAAAGTGCCTATGGTAGGATCGTTCCCTCATCCATCAAGTATGAGATTTCTTACTTATGAAGAGCTTAAAGAGGCAACTAATAACTTTGAAGCAGCGAGCATCTTGGGGGAGGGTGGTTTTGGCAGGGTTTTTAAGGGCGTCTTAAGTGATGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGCGACAAGGAGTTTTTGGTCGAGGTCGAGATGCTTAGTCGGTTGCATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGACTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTCTAGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTGGATGCTGCTCGAGGACTTGCTTACCTTCATGAAGACTCGCAACCTTGTGTTATCCATAGAGACTTTAAAGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAGGTTGCTGACTTCGGTCTGGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGGTATGTCGCTCCCGAGTATGCAATGACTGGTCATCTACTTGTTAAAAGTGATGTTTATAGCTATGGAGTTGTTCTTCTTGAGTTGCTCACGGGAAGGAAACCTGTAGATATGTCACAACCATCAGGACAGGAGAACCTGGTCACATGGGCTAGGCCAATTTTGAGAGACAAGGATCGGTTGGAAGAACTTGCTGATCCACGACTTGGAGGAAAATATCCGAAGGAAGATTTCGTGCGGGTGTGTACCATTGCTGCCGCGTGTGTCGCTCCCGAGGCTGGCCAACGCCCAACAATGGGCGAAGTTGTACAGTCTCTTAAAATGGTGCAGCGTGTTACAGAATACCAAGACTCCATGGTACCATCCTCCAACAACCGACCCAATCTTAGACAGTCGTCCACGACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCTGAAGATCTTCACGAGGGACGATGA | 2253 | 45.72 | LLLLGFRFDSLFGDVTSPLWSLSDSSVMSVPAASVAAGILKQVSCRFPKQFILLWFVISFTNAYVPDIPAAPLVAPAVHNMPFPAKFPLHQHHHRKYMSPQSAPAAGLAPASPPYYGPLITSGHPPTSSSFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPNAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASAINSSLTMHKVHLDPTLVGDYNLLNITWFKPPPPSQAPIASASPVAAPTYHFPASTSLSPPSKEHHSNLTLLLGIGAGFLFIAILFVLIICLCTSHRGKNEAPALVAEKPRVEDKVPMVGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSMVPSSNNRPNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR | 750 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4411712 | 4417498 | - | Maker00038498 | Lcy12g0363 | 648426 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0363 | 750 | Gene3D | Phosphorylase Kinase; domain 1 | 387 | 483 | - | - | |
Lcy12g0363 | 750 | Gene3D | Transferase(Phosphotransferase) domain 1 | 484 | 703 | - | - | |
Lcy12g0363 | 750 | MobiDBLite | consensus disorder prediction | 124 | 144 | - | - | |
Lcy12g0363 | 750 | SUPERFAMILY | Protein kinase-like (PK-like) | 379 | 683 | IPR011009 | - | |
Lcy12g0363 | 750 | Pfam | Protein tyrosine and serine/threonine kinase | 409 | 681 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy12g0363 | 750 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 530 | 542 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy12g0363 | 750 | ProSitePatterns | Protein kinases ATP-binding region signature. | 412 | 434 | IPR017441 | GO:0005524(InterPro) | |
Lcy12g0363 | 750 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 386 | 483 | - | - | |
Lcy12g0363 | 750 | ProSiteProfiles | Protein kinase domain profile. | 406 | 684 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy12g0363 | 750 | CDD | STKc_IRAK | 412 | 682 | - | - | |
Lcy12g0363 | 750 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 484 | 700 | - | - | |
Lcy12g0363 | 750 | PANTHER | OS01G0750732 PROTEIN | 175 | 724 | IPR050885 | - | |
Lcy12g0363 | 750 | MobiDBLite | consensus disorder prediction | 691 | 730 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0875 | Lcy-Chr11:25989704 | Lcy12g0363 | Lcy-Chr12:4411712 | 6.01E-72 | dispersed | |
Lcy12g0363 | Lcy-Chr12:4411712 | Lcy12g2069 | Lcy-Chr12:42064622 | 1.46E-121 | dispersed | |
Lcy12g0393 | Lcy-Chr12:4806527 | Lcy12g0363 | Lcy-Chr12:4411712 | 1.05E-84 | dispersed | |
Lcy2g0919 | Lcy-Chr2:8443882 | Lcy12g0363 | Lcy-Chr12:4411712 | 1.04E-37 | dispersed | |
Lcy8g1913 | Lcy-Chr8:45392921 | Lcy12g0363 | Lcy-Chr12:4411712 | 3.25E-70 | dispersed | |
Lcy12g0363 | Lcy-Chr12:4411712 | Lcy3g2215 | Lcy-Chr3:48994991 | 5.49E-118 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65487 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0363 | - | - | - | 0.0 |