Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0367 ATGGAGAAGAAGAAGGAAGAGATTATAAAGATGGAGGACACTAGCACGAGCGGCGGCGGCGGCGGCGGCGGTGGTGGGTATTTGTCATTTTCCGATAATATGATAGCAAATAGTTTCTTGGATTTTTCTGATGGTGAAAAATGCTCTGTTGGGTTCATGGAGCTGCTTGGTCTCAATAATCATGAGTTTAAGGATTACTGTTCCGAGGTTTTCAATCCTCCGGCCACCCCCAATTCCTCCTCCGTCTCCTCCGCCTCTAGCGACGCCGTTAACGACGACCCCACCGCCGCCGATCACAAGGCTGATGATCATGACCTACAACAACAACAACAACACAAACCCACTAAACAATTGAAGGCAAAGAAGACGAATGGAAAGAGAGAAAAAGAGGCAAGATTTGCATTCATGACGAAGAGCGAAGTTGATCATCTAGAAGATGGATATCGATGGAGAAAGTATGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCTAGGAGCTATTATCGTTGCACTAGTGCAGCTTGTAATGTAAAGAAGAGAGTTGAACGATCATATGCTGATCCAACCATTGTGGTGACCACCTATGAAGGCCAACACACTCACCCGAGCCCGGTCCTCACCCGGTCCGCCCTAGGCATTTCCGTTCCACCACCGCCCTCCACCGATATATCGGGAGGAGGGTGTGTTGGCATTGCGGCCATGCCATGGCTCAAAGCTAGCAACAACTCTCACGGTCAGTTTGTTTCTTTAGAATTTTGA 759 48.22 MEKKKEEIIKMEDTSTSGGGGGGGGGYLSFSDNMIANSFLDFSDGEKCSVGFMELLGLNNHEFKDYCSEVFNPPATPNSSSVSSASSDAVNDDPTAADHKADDHDLQQQQQHKPTKQLKAKKTNGKREKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSYADPTIVVTTYEGQHTHPSPVLTRSALGISVPPPPSTDISGGGCVGIAAMPWLKASNNSHGQFVSLEF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4467580 4469820 + Maker00039032 Lcy12g0367 648430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0367 252 ProSiteProfiles WRKY domain profile. 139 204 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0367 252 MobiDBLite consensus disorder prediction 75 128 - -
Lcy12g0367 252 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0367 252 SMART WRKY_cls 144 203 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0367 252 MobiDBLite consensus disorder prediction 75 91 - -
Lcy12g0367 252 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 84 208 IPR044810 GO:0003700(InterPro)
Lcy12g0367 252 FunFam WRKY transcription factor 57 130 204 - -
Lcy12g0367 252 MobiDBLite consensus disorder prediction 1 23 - -
Lcy12g0367 252 Gene3D WRKY domain 129 205 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0367 252 SUPERFAMILY WRKY DNA-binding domain 136 204 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0367 252 MobiDBLite consensus disorder prediction 93 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0367 Lcy-Chr12:4467580 Lcy12g0862 Lcy-Chr12:11979788 6.53E-53 dispersed
Lcy12g0367 Lcy-Chr12:4467580 Lcy3g1824 Lcy-Chr3:45430483 2.42E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19227 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0367 - - - 0.0