Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0367 | ATGGAGAAGAAGAAGGAAGAGATTATAAAGATGGAGGACACTAGCACGAGCGGCGGCGGCGGCGGCGGCGGTGGTGGGTATTTGTCATTTTCCGATAATATGATAGCAAATAGTTTCTTGGATTTTTCTGATGGTGAAAAATGCTCTGTTGGGTTCATGGAGCTGCTTGGTCTCAATAATCATGAGTTTAAGGATTACTGTTCCGAGGTTTTCAATCCTCCGGCCACCCCCAATTCCTCCTCCGTCTCCTCCGCCTCTAGCGACGCCGTTAACGACGACCCCACCGCCGCCGATCACAAGGCTGATGATCATGACCTACAACAACAACAACAACACAAACCCACTAAACAATTGAAGGCAAAGAAGACGAATGGAAAGAGAGAAAAAGAGGCAAGATTTGCATTCATGACGAAGAGCGAAGTTGATCATCTAGAAGATGGATATCGATGGAGAAAGTATGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCTAGGAGCTATTATCGTTGCACTAGTGCAGCTTGTAATGTAAAGAAGAGAGTTGAACGATCATATGCTGATCCAACCATTGTGGTGACCACCTATGAAGGCCAACACACTCACCCGAGCCCGGTCCTCACCCGGTCCGCCCTAGGCATTTCCGTTCCACCACCGCCCTCCACCGATATATCGGGAGGAGGGTGTGTTGGCATTGCGGCCATGCCATGGCTCAAAGCTAGCAACAACTCTCACGGTCAGTTTGTTTCTTTAGAATTTTGA | 759 | 48.22 | MEKKKEEIIKMEDTSTSGGGGGGGGGYLSFSDNMIANSFLDFSDGEKCSVGFMELLGLNNHEFKDYCSEVFNPPATPNSSSVSSASSDAVNDDPTAADHKADDHDLQQQQQHKPTKQLKAKKTNGKREKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSYADPTIVVTTYEGQHTHPSPVLTRSALGISVPPPPSTDISGGGCVGIAAMPWLKASNNSHGQFVSLEF | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4467580 | 4469820 | + | Maker00039032 | Lcy12g0367 | 648430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0367 | 252 | ProSiteProfiles | WRKY domain profile. | 139 | 204 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy12g0367 | 252 | MobiDBLite | consensus disorder prediction | 75 | 128 | - | - | |
Lcy12g0367 | 252 | Pfam | WRKY DNA -binding domain | 145 | 202 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy12g0367 | 252 | SMART | WRKY_cls | 144 | 203 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy12g0367 | 252 | MobiDBLite | consensus disorder prediction | 75 | 91 | - | - | |
Lcy12g0367 | 252 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 84 | 208 | IPR044810 | GO:0003700(InterPro) | |
Lcy12g0367 | 252 | FunFam | WRKY transcription factor 57 | 130 | 204 | - | - | |
Lcy12g0367 | 252 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lcy12g0367 | 252 | Gene3D | WRKY domain | 129 | 205 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy12g0367 | 252 | SUPERFAMILY | WRKY DNA-binding domain | 136 | 204 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy12g0367 | 252 | MobiDBLite | consensus disorder prediction | 93 | 110 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0367 | Lcy-Chr12:4467580 | Lcy12g0862 | Lcy-Chr12:11979788 | 6.53E-53 | dispersed | |
Lcy12g0367 | Lcy-Chr12:4467580 | Lcy3g1824 | Lcy-Chr3:45430483 | 2.42E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19227 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0367 | - | - | - | 0.0 |