Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0381 ATGGAGGAAACTTTTGTTCCTTTTCGAGGAATCAAGAATGACCTGAAGGGGAGATTGGTTTGTTACAAACAAGACTGGACTGGTGGGTTGAGAGCTGGATATAGGATTTTGGCTCCCACCACTTACATATTCTTTGCCTCTGCAATCCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAGTACTGATGGAGTGCTGACTGCAGTTCAAACCTTAGCCTCCACAGCCCTTTGTGGGATCATTCACTCTATTGTTGGAGGTCAACCTTTGCTAATCTTGGGAGTAGCAGAGCCTACTGTTATTATGTACACCTTCATGTTTAATTTCGCGAAGGAACGACCCGAGTTGGGCCGGAATCTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCCTAATGGCTATATTAGGAGCTTGCTCCATCATCAATAGGTTCACACGTCTGGCCGGTGAATTGTTCGGTTTGCTTATCGCAATGCTTTTCATGCAACAAGCGGTCAAAGGACTTGTGGATGAGTTTCGCATCCCAGAACGTGAAAATCCGAAATTGGTCGAGTTTATACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTGTCATTTGGCCTTCTACTCACTGCTTTAAGGAGTCGAAAAGCACGGTCGTGGCGATATGGATCTGGTTGGCTAAGAAGCTTGATAGCAGACTATGGAGTGCCGCTCATGGTTCTTGTTTGGACAGGTATATCCTATATACCTTCAAAAAGTGTCCCACAAGGTATCCCAAGGCGACTCTTCAGCCCGAATCCATGGTCTCCCGGTGCATACGACAATTGGACTGTTATTAAGGATATGCTTGATGTTCCAGTCATTTATATTTGTGGAGCTTTCATCCCGGCGACGATGATTGCGGTGCTTTACTATTTCGACCATAGTGTTGCATCTCAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAACCATCTTCTTACCATTATGATTTACTTCTATTGGGATTCTTGACCTTAATATGTGGTCTGCTTGGAATTCCTCCATCCAATGGAGTCATCCCACAATCTCCAATGCATACAAAGAGCCTGGCTACTCTCAAACACCAGTTGCTGCGGAATAAACTTGTAGAAACGGCACGGAGTAGTATGAGAAAGAATGCTAGCTTGGGGCAGTTGTATGGAAATATGCAAGAAGCATACCATCAAATGCAGACCCCCCTGATCTTCCAACAGCCTTCAGCTCGTGGACTGAATGAGCTAAAAGAAACAACCATTCAGGCAGCTTCTAGTATGGGCAGTTTCGATGCTCCGGTCGATGAGACAATATTCGACATCGAAAAGGAAATTGATGATCTATTGCCTGTTGAGGTGAAAGAACAGCGTGTAAGTAATTTGCTTCAAGCTACAATGGTGGGAGGATGTGTTGCAGCCATGCCGGTCCTGAAAAAGATCCCGACCTCGGTTCTATGGGGTTACTTCGCCTTTATGGCGATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTCTTCACTGCACCCAGCAGAAGATACAAAGTTCTTGAGGATTACCACGCGACTTTCGTCGAAACCGTGCCATTCAAATCGATTGCACTTTTTACCATTTTCCAAACTGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCGATTGCTGGGGTCATGTTTCCTCTGATGATCATGCTCCTCGTCCCCGTCAGACAATACCTTCTTCCCAAGTTTTTCAAAGGTGCACATCTCCAAGACCTCGATGCAGCCGAATATGAAGAAGCACCGGCCTTACCGTTCAATCTTGCGACGGAAGCCGAGCTGGGAGCTGGAGCCTCGTTTGGTGGGGATGGAGAGATTTTAGACGAGGTTATCACCCGAAGCCGTGGTGAGTTTAGGCATATTAGCAGTCCTAAAATCACAAGCTCCACGGCAACACCGACATGTGACCGAAAAAGTTTCGACAGCCCTCATCGCTCTTTCAGCCCCCGGGTGAGCGAGCTAAAAGGAGAGCACAGTCCTCGAGCGGGTGGACGAGGGACACCGGGTCAGAGAAGTGCAGAAACTAAACCATCCAGCCTTGGAAAGAGCCCTCTTAACACAGCATCAAAGTAG 2151 46.54 MEETFVPFRGIKNDLKGRLVCYKQDWTGGLRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAVKGLVDEFRIPERENPKLVEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGISYIPSKSVPQGIPRRLFSPNPWSPGAYDNWTVIKDMLDVPVIYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVETARSSMRKNASLGQLYGNMQEAYHQMQTPLIFQQPSARGLNELKETTIQAASSMGSFDAPVDETIFDIEKEIDDLLPVEVKEQRVSNLLQATMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKSIALFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGAGASFGGDGEILDEVITRSRGEFRHISSPKITSSTATPTCDRKSFDSPHRSFSPRVSELKGEHSPRAGGRGTPGQRSAETKPSSLGKSPLNTASK 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4628462 4632923 + Maker00039027 Lcy12g0381 648444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0381 716 MobiDBLite consensus disorder prediction 664 686 - -
Lcy12g0381 716 MobiDBLite consensus disorder prediction 697 716 - -
Lcy12g0381 716 Pfam HCO3- transporter integral membrane domain 7 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy12g0381 716 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy12g0381 716 Pfam HCO3- transporter integral membrane domain 202 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy12g0381 716 MobiDBLite consensus disorder prediction 648 663 - -
Lcy12g0381 716 MobiDBLite consensus disorder prediction 648 716 - -
Lcy12g0381 716 FunFam probable boron transporter 2 18 60 - -
Lcy12g0381 716 Gene3D Helical hairpin bin 18 60 - -
Lcy12g0381 716 PANTHER ANION EXCHANGE PROTEIN 4 639 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0046715(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0381 Lcy-Chr12:4628462 Lcy5g2218 Lcy-Chr5:45181678 0 dispersed
Lcy12g0381 Lcy-Chr12:4628462 Lcy12g0614 Lcy-Chr12:7500742 2.54E-273 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0381 K24194 - csv:101205388 1377.07