Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0389 ATGGAGACCTTTCTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGACCAGATCTCAGATGCAGTTCTTGATGCTTGCCTTGCCCAAGATCCTGACAGCAAGGTTGCTTGTGAGACCTGCACCAAGACCAACATGGTTATGGTTTTTGGAGAGATTACAACCAAAGCCAACGTGGACTACGAGAAGATCGTCCGAGACACTTGCCGGTCCATCGGATTCATCTCAGATGATGTTGGTCTCGATGCCGACAACTGCAAGGTCCTGGTCAACATCGAGCAGCAGAGTCCTGATATTGCCCAAGGTGTCCATGGTCATTTCACTAAGCGACCTGAGGACATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACAGATGAGACCCCAGAACTCATGCCCCTGAGTCATGTCCTTGCAACGAAGCTCGGCGCTCGCCTCACTGAGGTGAGGAAGAATGGCACCTGCTCATGGTTGAGACCTGACGGCAAGACCCAAGTTACTGTGGAGTATTACAATGATAATGACATGGCAGCCATGGCTCTTTCATCTACCTTCACAGGAAAAGCTGTTCCTTTGAATGCACCAACCGAGCTGTCTTCCTCGGTTCGCAGCAACGGGAGAGTCTTGATGAGGAAATCTGGAAAGCCAGCATCTTCCTCGGGCAGCCCATGGTATGGTCCTGACCGTGTCAAGTACCTCGGACCATTCTCTGGTGAGCCACCATCTTACCTCAAAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCTGGTCTATCAGCTGACCCCGAGACCTTTGCTAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTAGGATGTGTGTTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAAATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAGAGCATTTTGGCCATTTGGGCATGTCAAGTAGTCCTGATGGGTGCAGTTGAAGGTTACCGTATTGCTGGAGGACCACTTGGAGAAATTACTGATCCCATCTACCCAGGTGGTAGCTTTGATCCCCTCGGGCTGGCCGATGATCCAGAGGCGTTTGCAGAGCTTAAGGTAAAAGAACTTAAGAACGGCCGTCTTGCAATGTTTTCCATGTTTGGGTTTTTCGTGCAGGCCATTGTAACAGGAAAAGGTCCATTGGAGAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA 1341 50.34 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFISDDVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCSWLRPDGKTQVTVEYYNDNDMAAMALSSTFTGKAVPLNAPTELSSSVRSNGRVLMRKSGKPASSSGSPWYGPDRVKYLGPFSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4730039 4734688 - Maker00039052 Lcy12g0389 648452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0389 446 SUPERFAMILY Chlorophyll a-b binding protein 229 443 - -
Lcy12g0389 446 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 184 446 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy12g0389 446 Gene3D Chlorophyll a/b binding protein domain 237 439 - -
Lcy12g0389 446 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478(InterPro)|GO:0006556(InterPro)
Lcy12g0389 446 SUPERFAMILY S-adenosylmethionine synthetase 115 182 IPR022636 GO:0004478(InterPro)|GO:0006556(InterPro)
Lcy12g0389 446 Gene3D - 11 116 - -
Lcy12g0389 446 Gene3D - 117 139 - -
Lcy12g0389 446 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478(InterPro)|GO:0006556(InterPro)
Lcy12g0389 446 Gene3D - 4 182 - -
Lcy12g0389 446 FunFam S-adenosylmethionine synthetase 1 11 116 - -
Lcy12g0389 446 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478(InterPro)|GO:0006556(InterPro)
Lcy12g0389 446 FunFam Chlorophyll a-b binding protein, chloroplastic 237 439 - -
Lcy12g0389 446 Pfam Chlorophyll A-B binding protein 246 413 IPR022796 -
Lcy12g0389 446 Pfam S-adenosylmethionine synthetase, central domain 118 180 IPR022629 GO:0004478(InterPro)|GO:0006556(InterPro)
Lcy12g0389 446 FunFam S-adenosylmethionine synthase 117 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0389 Lcy-Chr12:4730039 Lcy1g0204 Lcy-Chr1:1857306 1.45E-170 dispersed
Lcy12g0389 Lcy-Chr12:4730039 Lcy12g0390 Lcy-Chr12:4744474 2.24E-125 tandem
Lcy4g0371 Lcy-Chr4:4641525 Lcy12g0389 Lcy-Chr12:4730039 2.61E-148 transposed
Lcy12g0389 Lcy-Chr12:4730039 Lcy3g1858 Lcy-Chr3:45748878 1.15E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0389 K08912 - csv:101203342 524.242