Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0392 | ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTACGGTATGGGGTCTATGGACTTGAGGGCTGCTGTTGGGAAGAGGAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTGGAATCTGATCATTTGAGCAGGCAACTTTTTCCAATCGTCTCTGGGATTCCCCTGACTGGAGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATGGAGAAAGGTAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATAGAAGATGAGAATCTTAATGATGAAGCTCGAACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAATTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCGAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCACTGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAACGCATTCTAAGGCGAGTAATGCGCTCGTTGCAAATGTTATGCAGCGATTTTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAATTCCCCGCCTGATGAGCAGACTAGTAGTTATTTACTGTTAACTCTATTGCGAATACTTGCCAATTTGCACTTAAAGATATTTAATGCTGAACTCTTGTTGTCCTTAGCACATTCTTATGTGATTGATTTTGTGTTACTTGGTGTAGCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGCCTTGCCTGTCAATCTAGTGAGCATGGGGGAAAAAACTTATCTGGGATTTTGCATGAACCCCAGAATTTGCTGAACAATGGGGCATTGGTTGGTAAATCAGATATAGTTTCTACTTTTCTCTCAAATGGTTCTCAGGTACCTTTGAGACCTTCTAAACAACATGACACGATGCCAATATCTGAGACACCAGTACAAGCAATTGTTAGGGGTGGAGATACACCAGCTATATCTTCTATAAAACCAAGCACTTCAAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAATGCAAAATGGTGAACTTTGATTTGAATGATGCTTATGTTGATTCAGACGATGGCATGGAAGATATCGAGAGACAAGCACTCCCGGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCCGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGACTGGTTATCACACAGTCCCACAGAAATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGTCAGACTGAGACTGCATGGGACGATCTTTACCATGATCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCCGACGAAGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGGTTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAACGAGAATTACTGTAGAATCACAAGTGTAAACCCCGTTGCCGTTTCTATATCTAAGAAGGCTATATTTTCAGTGAAAGGAATAAACTTGACCCGACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTTACTCAGGAAGCTTCAGACGACACAACAGAAAGTGGTGATAACTTGAAGGCACAAGATGACAGCCAATGTGTTACCTTTTCTTGCTCTATTCCTGTCGTCTACGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGTAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAGATCTGCACACTTCAGAGTGTTTTAGAGTTTACTGAAACATGTTCAAATTCGGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAACGCAATGGAGTTTATTCATGAAATTGGTTGGCTATTTCATAGATATCAATTGAAGTCTAGATTAGGTCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGTTGTTAGATGTTCTTCTCGATGGGACCGTGGATGCAGGAGATCACCCGTCCTTGAATTTCACATTGACGGAAATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGGTCACTGGTGGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATACTTCAAGTTCTGAAGACAATGCATCCATTAATGGAGGGACCGGTAGCTTCCTGTTTAGACCTGATGTCATAGGCCCAGCCGGTTTGACCCCTCTCCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACTAATGATCCGGGAATGGTAAGGATTATCGCAGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCGACACCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCATATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAATCAGAAGCAGAGCACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGGACAGAACTAAAACCTACTCAGCAGCATTGCAGGCTTTGTGTCAGGAAACCGCTCGGTTGTGGAACGTCGTCTAGTGCGTCTCTAGTCTACAGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTCTGTGTGTGTGTGGCGCTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG | 3132 | 44.32 | MEAGYGGEACQLYGMGSMDLRAAVGKRSLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTGGSSNSSSSCSDEANMGMEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGNWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSTAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHLKIFNAELLLSLAHSYVIDFVLLGVANGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQNLLNNGALVGKSDIVSTFLSNGSQVPLRPSKQHDTMPISETPVQAIVRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMVNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTETAWDDLYHDLSTSLNRLLDVSDEAFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNENYCRITSVNPVAVSISKKAIFSVKGINLTRPTTRLLCAIEGKYLTQEASDDTTESGDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCTEICTLQSVLEFTETCSNSGETAELEGRSNAMEFIHEIGWLFHRYQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGDHPSLNFTLTEMGLLHRAVRKNSRSLVELLLRYPSKVKDTSSSEDNASINGGTGSFLFRPDVIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVRIIAVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSTLSDGSWNQKQSTDLTSSRFEIGRTELKPTQQHCRLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS | 1043 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4763781 | 4771815 | - | Maker00038753 | Lcy12g0392 | 648455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0392 | 1043 | MobiDBLite | consensus disorder prediction | 72 | 96 | - | - | |
Lcy12g0392 | 1043 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 34 | 1041 | IPR044817 | GO:0003677(InterPro) | |
Lcy12g0392 | 1043 | Pfam | SBP domain | 155 | 228 | IPR004333 | GO:0003677(InterPro) | |
Lcy12g0392 | 1043 | Gene3D | - | 764 | 932 | IPR036770 | - | |
Lcy12g0392 | 1043 | SUPERFAMILY | SBT domain | 153 | 234 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy12g0392 | 1043 | SUPERFAMILY | Ankyrin repeat | 806 | 925 | IPR036770 | - | |
Lcy12g0392 | 1043 | Gene3D | - | 146 | 216 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy12g0392 | 1043 | MobiDBLite | consensus disorder prediction | 381 | 398 | - | - | |
Lcy12g0392 | 1043 | MobiDBLite | consensus disorder prediction | 378 | 398 | - | - | |
Lcy12g0392 | 1043 | FunFam | Squamosa promoter-binding-like protein 14 | 146 | 216 | - | - | |
Lcy12g0392 | 1043 | ProSiteProfiles | Zinc finger SBP-type profile. | 152 | 229 | IPR004333 | GO:0003677(InterPro) | |
Lcy12g0392 | 1043 | MobiDBLite | consensus disorder prediction | 221 | 241 | - | - | |
Lcy12g0392 | 1043 | MobiDBLite | consensus disorder prediction | 444 | 479 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0392 | Lcy-Chr12:4763781 | Lcy9g2376 | Lcy-Chr9:48054804 | 1.03E-124 | dispersed | |
Lcy12g0392 | Lcy-Chr12:4763781 | Lcy5g2472 | Lcy-Chr5:47465413 | 6.28E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19229 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0392 | - | - | - | 0.0 |