Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0392 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTACGGTATGGGGTCTATGGACTTGAGGGCTGCTGTTGGGAAGAGGAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTGGAATCTGATCATTTGAGCAGGCAACTTTTTCCAATCGTCTCTGGGATTCCCCTGACTGGAGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATGGAGAAAGGTAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATAGAAGATGAGAATCTTAATGATGAAGCTCGAACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAATTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCGAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCACTGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAACGCATTCTAAGGCGAGTAATGCGCTCGTTGCAAATGTTATGCAGCGATTTTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAATTCCCCGCCTGATGAGCAGACTAGTAGTTATTTACTGTTAACTCTATTGCGAATACTTGCCAATTTGCACTTAAAGATATTTAATGCTGAACTCTTGTTGTCCTTAGCACATTCTTATGTGATTGATTTTGTGTTACTTGGTGTAGCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGCCTTGCCTGTCAATCTAGTGAGCATGGGGGAAAAAACTTATCTGGGATTTTGCATGAACCCCAGAATTTGCTGAACAATGGGGCATTGGTTGGTAAATCAGATATAGTTTCTACTTTTCTCTCAAATGGTTCTCAGGTACCTTTGAGACCTTCTAAACAACATGACACGATGCCAATATCTGAGACACCAGTACAAGCAATTGTTAGGGGTGGAGATACACCAGCTATATCTTCTATAAAACCAAGCACTTCAAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAATGCAAAATGGTGAACTTTGATTTGAATGATGCTTATGTTGATTCAGACGATGGCATGGAAGATATCGAGAGACAAGCACTCCCGGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCCGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGACTGGTTATCACACAGTCCCACAGAAATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGTCAGACTGAGACTGCATGGGACGATCTTTACCATGATCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCCGACGAAGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGGTTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAACGAGAATTACTGTAGAATCACAAGTGTAAACCCCGTTGCCGTTTCTATATCTAAGAAGGCTATATTTTCAGTGAAAGGAATAAACTTGACCCGACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTTACTCAGGAAGCTTCAGACGACACAACAGAAAGTGGTGATAACTTGAAGGCACAAGATGACAGCCAATGTGTTACCTTTTCTTGCTCTATTCCTGTCGTCTACGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGTAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAGATCTGCACACTTCAGAGTGTTTTAGAGTTTACTGAAACATGTTCAAATTCGGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAACGCAATGGAGTTTATTCATGAAATTGGTTGGCTATTTCATAGATATCAATTGAAGTCTAGATTAGGTCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGTTGTTAGATGTTCTTCTCGATGGGACCGTGGATGCAGGAGATCACCCGTCCTTGAATTTCACATTGACGGAAATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGGTCACTGGTGGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATACTTCAAGTTCTGAAGACAATGCATCCATTAATGGAGGGACCGGTAGCTTCCTGTTTAGACCTGATGTCATAGGCCCAGCCGGTTTGACCCCTCTCCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACTAATGATCCGGGAATGGTAAGGATTATCGCAGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCGACACCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCATATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAATCAGAAGCAGAGCACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGGACAGAACTAAAACCTACTCAGCAGCATTGCAGGCTTTGTGTCAGGAAACCGCTCGGTTGTGGAACGTCGTCTAGTGCGTCTCTAGTCTACAGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTCTGTGTGTGTGTGGCGCTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3132 44.32 MEAGYGGEACQLYGMGSMDLRAAVGKRSLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTGGSSNSSSSCSDEANMGMEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGNWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSTAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHLKIFNAELLLSLAHSYVIDFVLLGVANGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQNLLNNGALVGKSDIVSTFLSNGSQVPLRPSKQHDTMPISETPVQAIVRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMVNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTETAWDDLYHDLSTSLNRLLDVSDEAFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNENYCRITSVNPVAVSISKKAIFSVKGINLTRPTTRLLCAIEGKYLTQEASDDTTESGDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCTEICTLQSVLEFTETCSNSGETAELEGRSNAMEFIHEIGWLFHRYQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGDHPSLNFTLTEMGLLHRAVRKNSRSLVELLLRYPSKVKDTSSSEDNASINGGTGSFLFRPDVIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVRIIAVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSTLSDGSWNQKQSTDLTSSRFEIGRTELKPTQQHCRLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4763781 4771815 - Maker00038753 Lcy12g0392 648455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 72 96 - -
Lcy12g0392 1043 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1041 IPR044817 GO:0003677(InterPro)
Lcy12g0392 1043 Pfam SBP domain 155 228 IPR004333 GO:0003677(InterPro)
Lcy12g0392 1043 Gene3D - 764 932 IPR036770 -
Lcy12g0392 1043 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy12g0392 1043 SUPERFAMILY Ankyrin repeat 806 925 IPR036770 -
Lcy12g0392 1043 Gene3D - 146 216 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 381 398 - -
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 378 398 - -
Lcy12g0392 1043 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
Lcy12g0392 1043 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677(InterPro)
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 221 241 - -
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 444 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0392 Lcy-Chr12:4763781 Lcy9g2376 Lcy-Chr9:48054804 1.03E-124 dispersed
Lcy12g0392 Lcy-Chr12:4763781 Lcy5g2472 Lcy-Chr5:47465413 6.28E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19229 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0392 - - - 0.0