Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0392 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTACGGTATGGGGTCTATGGACTTGAGGGCTGCTGTTGGGAAGAGGAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTGGAATCTGATCATTTGAGCAGGCAACTTTTTCCAATCGTCTCTGGGATTCCCCTGACTGGAGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATGGAGAAAGGTAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATAGAAGATGAGAATCTTAATGATGAAGCTCGAACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAATTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCGAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCACTGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAACGCATTCTAAGGCGAGTAATGCGCTCGTTGCAAATGTTATGCAGCGATTTTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAATTCCCCGCCTGATGAGCAGACTAGTAGTTATTTACTGTTAACTCTATTGCGAATACTTGCCAATTTGCACTTAAAGATATTTAATGCTGAACTCTTGTTGTCCTTAGCACATTCTTATGTGATTGATTTTGTGTTACTTGGTGTAGCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGCCTTGCCTGTCAATCTAGTGAGCATGGGGGAAAAAACTTATCTGGGATTTTGCATGAACCCCAGAATTTGCTGAACAATGGGGCATTGGTTGGTAAATCAGATATAGTTTCTACTTTTCTCTCAAATGGTTCTCAGGTACCTTTGAGACCTTCTAAACAACATGACACGATGCCAATATCTGAGACACCAGTACAAGCAATTGTTAGGGGTGGAGATACACCAGCTATATCTTCTATAAAACCAAGCACTTCAAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAATGCAAAATGGTGAACTTTGATTTGAATGATGCTTATGTTGATTCAGACGATGGCATGGAAGATATCGAGAGACAAGCACTCCCGGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCCGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGACTGGTTATCACACAGTCCCACAGAAATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGTCAGACTGAGACTGCATGGGACGATCTTTACCATGATCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCCGACGAAGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGGTTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAACGAGAATTACTGTAGAATCACAAGTGTAAACCCCGTTGCCGTTTCTATATCTAAGAAGGCTATATTTTCAGTGAAAGGAATAAACTTGACCCGACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTTACTCAGGAAGCTTCAGACGACACAACAGAAAGTGGTGATAACTTGAAGGCACAAGATGACAGCCAATGTGTTACCTTTTCTTGCTCTATTCCTGTCGTCTACGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGTAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAGATCTGCACACTTCAGAGTGTTTTAGAGTTTACTGAAACATGTTCAAATTCGGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAACGCAATGGAGTTTATTCATGAAATTGGTTGGCTATTTCATAGATATCAATTGAAGTCTAGATTAGGTCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGTTGTTAGATGTTCTTCTCGATGGGACCGTGGATGCAGGAGATCACCCGTCCTTGAATTTCACATTGACGGAAATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGGTCACTGGTGGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATACTTCAAGTTCTGAAGACAATGCATCCATTAATGGAGGGACCGGTAGCTTCCTGTTTAGACCTGATGTCATAGGCCCAGCCGGTTTGACCCCTCTCCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACTAATGATCCGGGAATGGTAAGGATTATCGCAGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCGACACCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCATATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAATCAGAAGCAGAGCACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGGACAGAACTAAAACCTACTCAGCAGCATTGCAGGCTTTGTGTCAGGAAACCGCTCGGTTGTGGAACGTCGTCTAGTGCGTCTCTAGTCTACAGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTCTGTGTGTGTGTGGCGCTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3132 44.32 MEAGYGGEACQLYGMGSMDLRAAVGKRSLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTGGSSNSSSSCSDEANMGMEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGNWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSTAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHLKIFNAELLLSLAHSYVIDFVLLGVANGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQNLLNNGALVGKSDIVSTFLSNGSQVPLRPSKQHDTMPISETPVQAIVRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMVNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTETAWDDLYHDLSTSLNRLLDVSDEAFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNENYCRITSVNPVAVSISKKAIFSVKGINLTRPTTRLLCAIEGKYLTQEASDDTTESGDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCTEICTLQSVLEFTETCSNSGETAELEGRSNAMEFIHEIGWLFHRYQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGDHPSLNFTLTEMGLLHRAVRKNSRSLVELLLRYPSKVKDTSSSEDNASINGGTGSFLFRPDVIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVRIIAVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSTLSDGSWNQKQSTDLTSSRFEIGRTELKPTQQHCRLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4763781 4771815 - Maker00038753 Lcy12g0392 648455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 72 96 - -
Lcy12g0392 1043 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1041 IPR044817 GO:0003677(InterPro)
Lcy12g0392 1043 Pfam SBP domain 155 228 IPR004333 GO:0003677(InterPro)
Lcy12g0392 1043 Gene3D - 764 932 IPR036770 -
Lcy12g0392 1043 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy12g0392 1043 SUPERFAMILY Ankyrin repeat 806 925 IPR036770 -
Lcy12g0392 1043 Gene3D - 146 216 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 381 398 - -
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 378 398 - -
Lcy12g0392 1043 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
Lcy12g0392 1043 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677(InterPro)
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 221 241 - -
Lcy12g0392 1043 MobiDBLite consensus disorder prediction 444 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0392 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0392 Lcy-Chr12:4763781 Lcy9g2376 Lcy-Chr9:48054804 1.03E-124 dispersed
Lcy12g0392 Lcy-Chr12:4763781 Lcy5g2472 Lcy-Chr5:47465413 6.28E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0392 . 180 1044 SBP-box Gene Family AT2G47070 54.0 6.0e-238 821.2
Lcy12g0392 . 25 1044 SBP-box Gene Family AT3G60030 53.4 7.9e-272 934.1
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50570 63.1 8.9e-38 155.2
Lcy9g2376 . 1 1073 SBP-box Gene Family AT1G20980 50.2 3.3e-271 932.2
Lcy12g0392 . 180 1044 SBP-box Gene Family AT2G47070 54.0 6.0e-238 821.2
Lcy12g0392 . 25 1044 SBP-box Gene Family AT3G60030 53.4 7.9e-272 934.1
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50570 63.1 8.9e-38 155.2
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50670 63.1 8.9e-38 155.2
Lcy9g2376 . 1 1073 SBP-box Gene Family AT1G20980 50.2 3.3e-271 932.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19229 None None None None Lcy TF