Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0393 ATGAGCTGCTTTAGCTGTTGTGAGGAAGATGAAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGCAAAAAATACAACAGGAAACAATGGAGGTTATCACAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTCAAAATGCAACCAATATTAGTGCCTACCATACCCGTTGATGAACTATCAGAAGTAACGGCCAACTTTGGAAATGATGCTTTGATTGGAGAGGGCTCATATGGGAGAGTATACTATGGGAAGCTTAGAAGCGGGCAGCCTGCTGCAATCAAGAAGCTAGATGCCAGTAAACAGCCTGATGATGAGTTTTTAGCACAGGTCTCCATGGTTTCAAGGCTGAAGCACGAAAATTTTGTTCAATTGCTCGGTTATTGCATTGATGGAAATTCCCGCATACTAGCATATGAGTATGCTTCTAATGGATCACTTCATGATATTCTTCATGGAAGAAAAGGAGTGAAAGGAGCACAGCCAGGTCCCGTTCTATCATGGGCACAACGTGTGAAAATTGCTGTAGGGGCTGCTAGAGGACTTGAGTATTTGCATGAAAAGGCCGAGTCCCATATTATTCATCGTGATATTAAGTCAAGCAATGTACTAATCTTTGATGATGATGTTGCTAAAATTGCTGATTTTGATTTGTCCAATCAAGCTCCTGATATGGCAGCACGCCTTCATTCAACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCGGAATATGCTATGACTGGTCAATTGAATGCCAAGAGTGACGTATACAGCTTTGGTGTAGTCTTGCTTGAACTTCTGACAGGGAGAAAACCTGTAGATCCTACACTACCGCGAGGACAACAAAGTCTAGTTACTTGGGCTACACCTAAACTGAGTGAAGATAAAGTTAGGCAGTGTGTCGATGGAAGGCTTGGCGGAGACTACCCCCCAAAAGCAGTAGCAAAGTTGGCAGCTGTTGCAGCCTTGTGTGTGCAATATGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATCTATTAAATGCCCGACCTGGGCCTTCTGGTGATGCATCAAACTCGTGA 1089 44.35 MSCFSCCEEDEIQKAADNGGMYAAKNTTGNNGGYHKPEAAPAVTQAVKMQPILVPTIPVDELSEVTANFGNDALIGEGSYGRVYYGKLRSGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHENFVQLLGYCIDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDGRLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPGPSGDASNS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4806527 4811015 + Maker00038899 Lcy12g0393 648456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0393 362 Gene3D Phosphorylase Kinase; domain 1 34 143 - -
Lcy12g0393 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Lcy12g0393 362 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Lcy12g0393 362 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Lcy12g0393 362 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Lcy12g0393 362 FunFam pto-interacting protein 1 145 356 - -
Lcy12g0393 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0393 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0393 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0393 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
Lcy12g0393 362 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0393 Lcy-Chr12:4806527 Lcy12g0363 Lcy-Chr12:4411712 1.05E-84 dispersed
Lcy3g1196 Lcy-Chr3:37279535 Lcy12g0393 Lcy-Chr12:4806527 1.09E-169 transposed
Lcy5g0575 Lcy-Chr5:6565333 Lcy12g0393 Lcy-Chr12:4806527 1.90E-162 transposed
Lcy12g0393 Lcy-Chr12:4806527 Lcy3g1859 Lcy-Chr3:45754066 1.59E-216 wgd
Lcy12g0393 Lcy-Chr12:4806527 Lcy4g1762 Lcy-Chr4:43650739 2.50E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65489 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0393 K13436 - csv:101223136 693.345