Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0400 ATGTGTGCCGACTCTCGGTCTTTCAAAGCTCCATGGAGCGAGATCTCAAGATTGAACAATATGGTAAAGCCACATGTTCGAAGAATTCTTGGTAATGGTAATCATATTTCTTTTTGGCATGATATCTGGGCTACTGATATAGACCTTGCTACAAGATTTTCCCAGATTTATAGGCTTTCTAATAATGCTCATGCAACGGTGGTTGATTTATGGAATTCGGAAAATAATGATTGGGATTTGGGTCTCAGAAGATGTCTTAAAGACTTGGAGATTGCGGATTGGGCATCTCTTGCCCATATATTACAAGCTTTTGCTCTAAGGAGGGCGAATAATTCATGCCAATGGTCTTTAGATCCATCTAAAAGCTACTCGGTTCGATCTATGATGCATTTTTTGGCTCCACCATCTGAGAGCCTCCCTATTGTTGTGAACATGGGAGCTAATTTCAAGTTGCTAACTAGTCCATTCGTCGATTACTCACCTGACAAGCATCCTCCAATTCCGGATAGCCTATCACCAGACATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGACAAAGGCCTGATGCGAAAACTTTGCTTTCTCATCCTTGGATACTGAACTGTCGACGGGCTTTGCATTCTTCTCTTCGTCATAGTGGCACATTGAGAAACGCTCAACAAGATGGATCAACTGAAGCAGAAATCTCTAATGGAGACAATCAAAACTCTTGTGAAAGCCCTTCGGCAGAGAAAAATGAAGTTGCTGATTCTGATTTGAAATCTGATTCGAGGAAGGAGTTGTCATCAGATGTTGCCACTGATACAAGCAAGTCCCAAAAAAATTTTGCTTCAGGCCCCAATTTTGTTGAGGAAGGAGAAAGCCTAGAAGAAGATACCCTATTGGATCAAGTTCCTACCTTATCCATTCATGAAAATTCATCTCTTCTAACTGGTTCTGGCAGACTTGCTACCTCTGAGCCAACTGAGTTTCAGGAATCTCATGGTAGAGCCCATGATGAAGTGATAATGAATGGTGAAGCTCCATTGGCAGAATTAAGAAAAGATGCTTCTAGAAAACATGGAGAGAAAGAAACTTCTACAACATCTAGAAGTAGATCATTTGGTTTTGGACCTGAAAGTCAAGATAATAGTTTTGAAAAGGTTTCAAAGATGTCAATTGCTTTGGGAGGAAATGAGCTGAGTAAATTTAGCGACACTCCTGGAGATGCATCCTTAGATGATTTATTTCAACCTTTAGATAAGCTCCCTGGGGATCAAGCTGCTGAAGCATCAACATCTTTATCTACCCCACAATCAAACATAGGTAATGTGCCAGTAAATGATGTTGGGAGAAATGACCTGGCCACAAAGTTGAGGGCTACAATTGCTCAAAAACAAATGGAAAATGAAATGGGACAGGCAAATGGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGATGAGAAGTTGCCCGGAGAAAACCTTTATCCTTTGCAGGCTGTTGAATTTGGCAGATTAGTTGGTTCATTGAGACCTGATGAACCCGAAGATATAATTGTATCTGCCTGTCAAAAACTGATTGCCATCTTCCATCAAAGACCTGAGCAGAAAATTGTTTATGTTACACAGCATGGTCTACTCCCATTAACAGAGTTGCTTGAAGTTCCAAAAACTCGTATTATATGTTCGGTGCTCCAGCTTATCAATCAGATAGTTAAGGATAACGTTGACTTCCAAGAAAACGCCTGTCTTGTTGGTCTGATTCCTCTGGTGATGGGCTTTGCGGTTCCCGATCGTCCCCGAGAAGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTTGCATGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGATTATGCAAAGTACAGGGAAATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTTCGAAATGGTTTCTGTCGTATAGCAGCAAAAAGTGGAATTTTGCTTAGGCTTATTAACACTCTGTACAGCTTGAATGAGGCAACTCGCTTAGCTTCCATAACAGTTGGGGCTGGATATCCAGTTGATGGTTTAACTCAACGGCCCCGGTCAGGTCAACTAGATCCTACCCACCCTATATTCAGTCAGTATGAGGCCTCATTTCCTGTACATGATCAGCCTGATCTTTTGAAAGTCAGGCATGGAATAGTTGATCATCACCTGTCTACTGGAACACCAGAACCTTCTAGGGCTTCAACTTCAAATTCTCAAAGATCAGATGCCATTCAATCCGATCACCGACACTTTTCCGCAGAGGCTGATAGGCCTCAATCAAGCAATACCACAAATGAAGCCTTGGGAACTTCTAAACCGTCAGAGCTAGCATCTTTAGAAAAAGTTGTTAATTTAGCAACCAAGGAACCGTCTGGCTCTGCTTCTAAAGAACATGAAAATGTAGATAGATGGCGAACTGAGCGGGTGGCCAATTCTAACAGGACTTCCACAGATAGGCCTCCAAAATTGGTGGAACCTGCATCTAATGGTTTTCCTACAGCATTGTCGGCTACTCAGCAAGAGCAAGTTCGGCCCCTTCTAAGTCTGTTGGACAAAGAACCCCCTTCTCGACATTTTTCCGGTCAGCTTGAGTACATGCGCCACCTTTCTGGATTGGAGAGACATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCATGATTTCTTAATGGCAGAATTCGCTGATGTTTCTCAACGTGGAAAAGACAATGGAAATCTTGACCCCACTTCTAAGGTGTCTCTTAAAACGGTGGCAAAGAAGGTAGGACCCCTAGTGTCCAATGAAGGAGCTGCGTCCACATCTGGAATTGCTTCACAGACGGCATCTGGGGTACTTTCAGGTTCAGGCGTATTAAATGCTAGACCAGGGAGTGCAACATCCTCTGGACTTCTTTACCACATGGTTTCAAGTTTGAATGCTGATGTCGCAAGGGAATACCTGGCGAAGGTGGCTGATCTTCTGCTCGAATTTGCTCAGGCAGATACGACTGTGAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTTCAGATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTGTCAACAGATCCAAACTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCAAACCTTGAACTCAAAGAAGGGTCTCTGGTATCGCAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGGAGGCAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTAATGCATTTTATTATATCAGACTCTCCTCTGAGAAAAGATGCGTTGCCTCTACTGTGCGATATGGCCCATGCATCTCGTAATTCTAGGGAGCAGTTAAGAGCCCACGGTGGATTAGATGTGTATTTGAGCCTACTAGACGATGAGCTTTGGTCTGTCACGGCATTGGATTCAATTGCTGTTTGCTTGGCTCATGACAATGACAACCGAAAAGTTGAACAGGCTTTGCTGAAAAAGGATGCAGTTCAGAAATTGGTGAAGTTCTTTCAGTGCTGTCCAGAACAACATTTTGTGCATATATTGGAGCCCTTCTTGAAAATCATCACAAAATCTTCCCGAATCAATACGACATTGGCTGTCAATGGATTAACCCCATTGCTTATAGCAAGGCTGGACCATCAGGATGCGATTGCTCGGCTTAATCTACTTAAACTGATAAAGGCTGTGTATGAGCATCATCCACGACCCAAACAATTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGAGATGGACAACGGTCTGGTGGGCAAGTGTTGGTGAAACAAATGGCTACATCTCTGCTTAAAGCACTTCATATAAATACCGTTTTGTAA 4056 42.16 MCADSRSFKAPWSEISRLNNMVKPHVRRILGNGNHISFWHDIWATDIDLATRFSQIYRLSNNAHATVVDLWNSENNDWDLGLRRCLKDLEIADWASLAHILQAFALRRANNSCQWSLDPSKSYSVRSMMHFLAPPSESLPIVVNMGANFKLLTSPFVDYSPDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWILNCRRALHSSLRHSGTLRNAQQDGSTEAEISNGDNQNSCESPSAEKNEVADSDLKSDSRKELSSDVATDTSKSQKNFASGPNFVEEGESLEEDTLLDQVPTLSIHENSSLLTGSGRLATSEPTEFQESHGRAHDEVIMNGEAPLAELRKDASRKHGEKETSTTSRSRSFGFGPESQDNSFEKVSKMSIALGGNELSKFSDTPGDASLDDLFQPLDKLPGDQAAEASTSLSTPQSNIGNVPVNDVGRNDLATKLRATIAQKQMENEMGQANGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLYPLQAVEFGRLVGSLRPDEPEDIIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYREMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLTQRPRSGQLDPTHPIFSQYEASFPVHDQPDLLKVRHGIVDHHLSTGTPEPSRASTSNSQRSDAIQSDHRHFSAEADRPQSSNTTNEALGTSKPSELASLEKVVNLATKEPSGSASKEHENVDRWRTERVANSNRTSTDRPPKLVEPASNGFPTALSATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRHLSGLERHETIMPLLHASNEKKINGEHDFLMAEFADVSQRGKDNGNLDPTSKVSLKTVAKKVGPLVSNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLYHMVSSLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLRKDALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4887670 4900735 + Maker00038722 Lcy12g0400 648463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 769 784 - -
Lcy12g0400 1351 Gene3D - 510 713 IPR011989 -
Lcy12g0400 1351 SUPERFAMILY Protein kinase-like (PK-like) 155 207 IPR011009 -
Lcy12g0400 1351 Gene3D Transferase(Phosphotransferase) domain 1 145 281 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 218 284 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 798 814 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 365 382 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 308 327 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 218 247 - -
Lcy12g0400 1351 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 239 1351 IPR052441 -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 308 334 - -
Lcy12g0400 1351 SMART arm_5 1131 1170 IPR000225 GO:0005515(InterPro)
Lcy12g0400 1351 SMART arm_5 1085 1129 IPR000225 GO:0005515(InterPro)
Lcy12g0400 1351 SMART arm_5 544 584 IPR000225 GO:0005515(InterPro)
Lcy12g0400 1351 SMART arm_5 629 672 IPR000225 GO:0005515(InterPro)
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 350 382 - -
Lcy12g0400 1351 Gene3D - 1004 1346 IPR011989 -
Lcy12g0400 1351 FunFam MAP3K epsilon protein kinase 1 506 714 - -
Lcy12g0400 1351 SUPERFAMILY ARM repeat 516 710 IPR016024 -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 248 268 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 834 851 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 399 445 - -
Lcy12g0400 1351 FunFam MAP3K epsilon protein kinase 1-like 1000 1346 - -
Lcy12g0400 1351 SUPERFAMILY ARM repeat 1012 1325 IPR016024 -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 425 443 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 350 364 - -
Lcy12g0400 1351 MobiDBLite consensus disorder prediction 763 867 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0400 Lcy-Chr12:4887670 Lcy5g1601 Lcy-Chr5:37639303 8.83E-68 dispersed
Lcy12g1606 Lcy-Chr12:36290097 Lcy12g0400 Lcy-Chr12:4887670 4.86E-21 transposed
Lcy12g0400 Lcy-Chr12:4887670 Lcy4g1738 Lcy-Chr4:43247421 1.99E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0400 - - - 0.0