Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0401 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCAAATCGGCGGCGAACAGTTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATTAAGGACGATCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCATCGGCCATTCAGCAGAGAGCCGTGAGGCCGATTATCGACGGTCGAGATGTTATTGCTCAGGCTCAATCTGGAACTGGAAAGACCTCCATGATTGCCCTAACTGTATGCCAGATGGTTGATACCACCAGCAGAGAGGTACAGGCATTGATCTTGTCCCCTACGAGAGAATTGGCAACCCAGACAGAGAAAGTTATATTGGCAATTGGAGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGCGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGAACACTGCGTACCAGAGCCATTAAGTTGCTAGTTCTGGATGAATCTGATGAGATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTCGAATGGTTGACTGAGAAGATGCGCAGCAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACCCGTGTCCTAATCACTACTGATGTTTGGGCCCGAGGGCTTGATGTTCAGCAGGCAAGTTGTTGGTTCTTTTATTTTATTGATCTTTTTGTCAATGCACTTTACAAGTTCAATTCTACGTCCGAGCAAGGGCGACCTCCACCCTTGGCCCTTAGGCTTATCCCAAAAATTCTAATTCTTATGTTTATTTGCATAAACTTCTGTCAGGTGTCGCTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCTGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAATTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGATGAGATGCCCATGAACGTTGCTGATTTGATTTAA 1158 45.25 MAAAATTSVVPPNRRRTVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIDGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQASCWFFYFIDLFVNALYKFNSTSEQGRPPPLALRLIPKILILMFICINFCQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4901404 4906165 - Maker00038805 Lcy12g0401 648464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0401 385 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 179 385 IPR001650 -
Lcy12g0401 385 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Lcy12g0401 385 Gene3D - 310 385 IPR027417 -
Lcy12g0401 385 CDD SF2_C_DEAD 212 355 - -
Lcy12g0401 385 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Lcy12g0401 385 Pfam DEAD/DEAH box helicase 62 213 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lcy12g0401 385 Gene3D - 13 244 IPR027417 -
Lcy12g0401 385 SMART helicmild6 214 346 IPR001650 -
Lcy12g0401 385 SMART ultradead3 56 237 IPR014001 -
Lcy12g0401 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 217 IPR027417 -
Lcy12g0401 385 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 210 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Lcy12g0401 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 384 IPR027417 -
Lcy12g0401 385 Pfam Helicase conserved C-terminal domain 315 346 IPR001650 -
Lcy12g0401 385 FunFam ATP-dependent RNA helicase DBP5 15 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0401 Lcy-Chr12:4901404 Lcy13g0134 Lcy-Chr13:1298270 1.90E-89 dispersed
Lcy12g0401 Lcy-Chr12:4901404 Lcy13g2195 Lcy-Chr13:40870732 6.50E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0401 K13025 - csv:101222664 518.079