Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0415 ATGTTCAGCTCCGGCAACCTCACCGTCATCTCCTCCGGTGCATTCCCGTCCCGAAGATCAGTTCCATGGCAGCTATTGTCCCTTCCGGACATCCAAATTTTGGAAATCTTCATTGCAATATCTGTTTTTACAGCAATAAAATCATTAAGGCAGAGGAGAAAACAGGGGCTACCTGTGTGGCCGGTCGTTGGAATGCTACCGTCTTTAGTCGCGGGACTCCGAAGCAACCTGTATGAATGGATCACCGAAGTGTTGTACCATCAAAATGGAACTTTCAGATTCAAAGGGCCATGGTTTAGTAGCTTGAATTGTGTTGTAACTTCAGACCCTCGTAACATTGAGCACATTCTGAAAACAGAGTTTCCCCTGTACCCAAAAGGCTCCTTCTTCCGCGACACAGTCCGTGACCTACTTGGCGACGGAATCTTCAACGCCGACGGCGAGATTTGGCACCGGCAGAGAAAGACGGCGAGCATCGAATTTCATTCAGCAAAGTTCCGGCGACTCACTGTGGAGTCTCTTCACGAGTTAGTCCACTCTCGGCTCCTCCCTGTTTTACACAGGCATTTCGTCGAACACTTGGTGCCCATCGATCTCCAAGACATTCTTCTCCGCCTAACATTCGACAATGTCTGTATGATCGCATTCGGCGTCGATCCCGGATGTTTGAGCCCTAATTTACCGGCGATTCCATTCGCCAACGCCTTCGAGGCGGCGACGGAAGCCACCGTCCTTCGATTCGTAACTCCAAATTTCATATGGAAAACAATGAGGTATTTCAATTTAGGGACAGAAAAGAGTCTCAAACGTGCCCTAAAAGAGGTCAATCAATTCGCGGAGAACGTAATTGAAAAGAGGAAAAAGGAAAAAATCAATGAAATCGAGAGATCGGACCTGTTGTCGGTGTTCATGGGACTGAGGGACGAGAACGGAGAGCCGTTTTCGGACAAGTTCTTGAAAGATATCTGCGTGAATTTCATACTTGCCGGAAGAGATACCTCGTCGGTGGCGTTGAGTTGGTTCTTTTGGCTGATTGATCGGAATCCGGAGGTGGAAGAGAGGATTCTGGAGGAGATCTGCCGGATATTGGAGATGAGAGGAGAGACGGCGGCGGAATCATCGGCCGGCGATGTGGCGTTCGAAGTAGAAGAGATAAAGAAGATGGAATATTTGCAAGGAGCTCTGTCTGAAGCTCTGAGACTGTTCCCTTCTGTGCCTGTTGATCATAAGGAGGTGAGTTTTGAGAAGCACCCTGTGGTGCCAAAACTTGCCTTGACAATGTACATGAAGCATGGCTTGAAGGTGAACTTGTTTAAACGAGAGAAGGAAGAGCTTCAGAAGTATTTCAAAAGTAAATAA 1359 47.83 MFSSGNLTVISSGAFPSRRSVPWQLLSLPDIQILEIFIAISVFTAIKSLRQRRKQGLPVWPVVGMLPSLVAGLRSNLYEWITEVLYHQNGTFRFKGPWFSSLNCVVTSDPRNIEHILKTEFPLYPKGSFFRDTVRDLLGDGIFNADGEIWHRQRKTASIEFHSAKFRRLTVESLHELVHSRLLPVLHRHFVEHLVPIDLQDILLRLTFDNVCMIAFGVDPGCLSPNLPAIPFANAFEAATEATVLRFVTPNFIWKTMRYFNLGTEKSLKRALKEVNQFAENVIEKRKKEKINEIERSDLLSVFMGLRDENGEPFSDKFLKDICVNFILAGRDTSSVALSWFFWLIDRNPEVEERILEEICRILEMRGETAAESSAGDVAFEVEEIKKMEYLQGALSEALRLFPSVPVDHKEVSFEKHPVVPKLALTMYMKHGLKVNLFKREKEELQKYFKSK 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5066713 5069940 - Maker00038401 Lcy12g0415 648478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0415 452 Pfam Cytochrome P450 57 409 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0415 452 Gene3D Cytochrome P450 47 422 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0415 452 SUPERFAMILY Cytochrome P450 56 440 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0415 452 PANTHER CYTOCHROME P450 47 413 - -
Lcy12g0415 452 Coils Coil 268 289 - -
Lcy12g0415 452 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0415 452 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0415 452 PRINTS E-class P450 group I signature 392 410 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0415 Lcy-Chr12:5066713 Lcy12g1638 Lcy-Chr12:36741963 1.82E-95 dispersed
Lcy12g0415 Lcy-Chr12:5066713 Lcy3g1870 Lcy-Chr3:45893797 5.49E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0415 K15402 - csv:101222831 627.861