Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0427 ATGGGTCGAGGAAAGATTGAGATCAAACGGATTGAGAATGCCAATAGCAGGCAAGTTACATTCTCCAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATCATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGTTCTGGCATGAAGCATACTCTTTCAAGATACAACAGATGTGTAGAATCTTCAGAGGCTGCGGTAGACGGGCACAAGGTTGAGTATCTTCATCTTCAGAAGCAAGAGCACGAGGAGCTATTGGGAAAGGATCTGACTGGCTTGGGCTTCAAGGAATTGCAAAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGTTCGGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGTCAGCGAGCTTCGATGTCTGTTTCCGCCAGTCGACTGTCCGCTTCCTGCTTATCTCGAATACTGCTCGCTAGAACAGAAGAACATTGGCATAAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCATTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGCTGAAAGAGACACTCATTCAAATGATTCAGGGAGTCAAATGGGCCTACTCTGA 684 45.47 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVESSEAAVDGHKVEYLHLQKQEHEELLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKVREQLLMEQLEQSRVQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNDSGSQMGLL 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5212290 5219049 + Maker00039057 Lcy12g0427 648490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0427 227 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g0427 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy12g0427 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g0427 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g0427 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g0427 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g0427 227 Coils Coil 111 131 - -
Lcy12g0427 227 Pfam K-box region 91 149 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy12g0427 227 ProSiteProfiles K-box domain profile. 73 187 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy12g0427 227 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g0427 227 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lcy12g0427 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 175 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy12g0427 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g0427 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g0427 227 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0427 Lcy-Chr12:5212290 Lcy13g0613 Lcy-Chr13:8059563 2.93E-36 dispersed
Lcy12g0427 Lcy-Chr12:5212290 Lcy6g0403 Lcy-Chr6:3814021 4.83E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19230 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0427 - - - 0.0