Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0450 ATGTGTGGTGGTCGAGAACAATCCAATTCTGCATCTACTACGTCGGCAAGCTCACCTAACCCCAAAGACATGAATAATCTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAACGATGCAGAAGGCTTCAAGCGTTTGATGGAGTCTGATTTGTTTTCGCTCAACAAGTCTGGACTCTGGTATGTTCGTCAAAAGGGCTCGAAACAAGTTGTTCATGAGCATAGAACACCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATGCTGAGGTTGATGTTAATCTCTCGTCTGGCACAGATAAGAGCACTGCTCTCCACTGTGCTACTTCCAGTGGATCTGTGAACGCTGTTGATATTGTTGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAGGGATATTAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTCAATAGTCATTCAAATGGATCCATGGATGTATCCTCTTTACATTTGTCAATCAAAACGCCTGATTCAGAGTCACCACCACTTTCCTCATTATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATGTCTTCTCCCAAATTTTCTGATGGGTTTGCAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGACATCAAGAACAGCATATATGCAACCGATGAGTTTCGCATGTTCTCTTTCAAGGTGAGACCTTGTTCTCGGGCATATTCCCATGATTGGACTGAGTGTCCTTTTGTCCACCCTGGGGAGAATGCTCGGAGAAGAGACCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAGTATGCACATGGAGTATTTGAGTGCTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGCAAGGATGGCACAAGTTGCAATAGGCGGGTTTGTTTCTTTGCTCACACCAATGAGGAACTAAGGCCATTATATGTGTCTACCGGATCTGCTGTCCCTTCCCCACGATCAATTGGGTCTGCCCCAACTGTAATGGATATGGCTACTGCACTGGGTCTTCTGCCTGGTTCACCTTCATCAGTGTCGGCTTTATCTCCATCTCCATTTACTCAGTCTATGTCTCCCTCTTCGAATGGTGTTTCTCACAATTCTGTGAACTGGCAGCAGCCAAATGTGCCAACTCTTCATCTTCCAGGAAGTAACCTTCAATCCAGCCGATTGAGGTCATCTCTGAATGCGAGGGATATGCCTCTGGAGGATCTGAATGTCTTGCCAGACTTTGACAACCAGCCACGAATTTTGAACGATATGAACTGTTTCTCTCAGCCTCGTCCGAGTGCTGTGTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTTGAAGAGCTATTTTCTTCCGAGATCTCTTCGTCTCCCCGATTCTCTGATCCAGCCGCCAATGTCTTTTCCCCTACGCGCAAGTCAACATTACTAAACCAGTTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGTATTATGTCTCCTAAGAATGTCGATCATCCTTTGTTGCAGGCCTCTTTTGGAGTTTCATCGCCGGGAAGGATGTCGCCAAGAAGCACCGAGCCACTGTCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACATCTCCGCACTCTCAGCTCAAGAGAGCTCGGATCCAATGTCCCGAGCTCATTGATCGGATCTCCTGGGAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGACGATCATCTTCTTTTGAGATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGTTGGCAGCACCCGGGATGGGCGCTGCAGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2178 46.56 MCGGREQSNSASTTSASSPNPKDMNNLTVDCEDSFYSLLELASDNDAEGFKRLMESDLFSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYAEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNSRDINGDRPVDVIFVHPKLQKQNTRFRLEELLNSHSNGSMDVSSLHLSIKTPDSESPPLSSLLEDEFPSPPKSMSSPKFSDGFANSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHNSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDMNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTLLNQFQQQQQNMLSPINTSIMSPKNVDHPLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSLIGSPGNSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAAPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5462034 5464211 + Maker00038559 Lcy12g0450 648513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0450 725 MobiDBLite consensus disorder prediction 194 231 - -
Lcy12g0450 725 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Lcy12g0450 725 Gene3D - 297 360 - -
Lcy12g0450 725 Pfam Ankyrin repeats (3 copies) 45 149 IPR002110 GO:0005515(InterPro)
Lcy12g0450 725 PRINTS Ankyrin repeat signature 81 96 IPR002110 GO:0005515(InterPro)
Lcy12g0450 725 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515(InterPro)
Lcy12g0450 725 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Lcy12g0450 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 322 IPR000571 GO:0046872(InterPro)
Lcy12g0450 725 Gene3D - 4 212 IPR036770 -
Lcy12g0450 725 SUPERFAMILY Ankyrin repeat 36 159 IPR036770 -
Lcy12g0450 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872(InterPro)
Lcy12g0450 725 PANTHER UNKEMPT FAMILY MEMBER 70 674 IPR045234 -
Lcy12g0450 725 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515(InterPro)
Lcy12g0450 725 MobiDBLite consensus disorder prediction 399 420 - -
Lcy12g0450 725 SMART ANK_2a 115 147 IPR002110 GO:0005515(InterPro)
Lcy12g0450 725 SMART ANK_2a 80 110 IPR002110 GO:0005515(InterPro)
Lcy12g0450 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872(InterPro)
Lcy12g0450 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872(InterPro)
Lcy12g0450 725 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0450 Lcy-Chr12:5462034 Lcy5g0682 Lcy-Chr5:8751751 5.37E-298 dispersed
Lcy12g0450 Lcy-Chr12:5462034 Lcy8g1738 Lcy-Chr8:43860671 7.42E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19231 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0450 - - - 0.0