Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0454 ATGGCGTTGGCTAGTCGCTTGAGATCCACCATCCCTGTCCTCAGCAAGTTTCTGAGATCCGAATCGTCCTGCTCTCCAGTACTGCTCTCAAGAACTTATGCCGCTGCACCGGGGAAAAATGAAGAAAAAGTGAAGGTGCCTCTTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATCTAGCTGCAGTTAAAGCTAATTCTTTAGACAAGGTGGAATCTGAGCTTGTAAACCTTGTCGAGGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGACCTGTCGGTTCCAGCGGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCAGATGTTGTAAAGAACTTTTTGGTTGTGTTGGCTGAGAATGGGAGGCTGAGATATGTAGATATCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATCCCCATTCCTCCACAAGAAGAGAAAGAATTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTCGATATGTCTATTAAAACCAGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTGGTCTTGATGGCCTCTAG 708 43.5 MALASRLRSTIPVLSKFLRSESSCSPVLLSRTYAAAPGKNEEKVKVPLALFGGSGNYASALYLAAVKANSLDKVESELVNLVEAIKKSPTFAQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYVDIIAKRFLELTMAHKGEVKAVVTTVIPIPPQEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVGLDGL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5510570 5513714 - Maker00038665 Lcy12g0454 648517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0454 235 PANTHER ATP SYNTHASE DELTA CHAIN 1 229 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Lcy12g0454 235 Pfam ATP synthase delta (OSCP) subunit 55 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy12g0454 235 Hamap ATP synthase subunit delta [atpD]. 49 228 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy12g0454 235 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 155 IPR026015 -
Lcy12g0454 235 PRINTS ATP synthase delta subunit signature 201 219 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy12g0454 235 PRINTS ATP synthase delta subunit signature 53 72 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy12g0454 235 PRINTS ATP synthase delta subunit signature 123 134 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy12g0454 235 PRINTS ATP synthase delta subunit signature 134 148 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy12g0454 235 PRINTS ATP synthase delta subunit signature 186 201 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy12g0454 235 NCBIfam ATP synthase F1 subunit delta 56 225 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy12g0454 235 Gene3D - 53 146 IPR026015 -
Lcy12g0454 235 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 188 207 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0454 Lcy-Chr12:5510570 Lcy9g0543 Lcy-Chr9:16971139 5.47E-12 dispersed
Lcy12g0454 Lcy-Chr12:5510570 Lcy3g1911 Lcy-Chr3:46346549 1.43E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0454 K02137 - rcu:8272168 337.421