Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g0465 | ATGGCAGAAATCCAATCCTTCGTATTCCTCTCGATTCTCTTTTTCCTCTCCATTAACCTAATCCGATCCATCTTCACCAGAACCGCCGTCAAATCCACCGCCCTCCGCCTCCCCCCGAGTCCGCCGTCGCTGCCGCTCATCGGCCACCTCCACCTCCTCTCGCCGGCGCTTTGCAATTCCTTCCGCCGCCTCTCCGATCGGTACGGCCCGCTCCTCTACCTCCGCCTCGGCGCCTCCCGCTGCCTCGTCGTCTCGTCGGCGCCGATCGCCGCCGAAATCTTCAAGTCGCACGACGTCGTTTTCGCCTCCCGTCCGATTCTGGCCTTCGCCGATAAGCTGTACTACGGAAAATCGGGGTTCGTGACGGCGCCGTACGGCGATTACTGGAGGTTCATGAAGAAGGTGTGCGTGACGGAGCTTCTCGGCGTCCGGCAACTGGAGCGGTCGCAGGGCGTCCGCCGAGAAGAAATCCGGCGGTTTGTGTCGAGAATCGCGGCGCATTCTCGGGTGAAGGAGGCTGTGGACATCGGCGCAGAGCTCATGAGACTGACGAACAATGCGACTTGCAGGATGGTGATGAGCACAGCATGCTCGGGAGAAAAGAACGACGCAGAAAGAATACGATATTTAGTGAAGGAAGCAATGGAGGTAGTTACACAGATATGCTTTGGAGATGTATTGGGGCCATTGAAGAATTTGGGATTCTTGCTTTATGGGAAGAGGGCTCTTGATGTTGGCAGAAGTTCTGATGAACTAATGGAGAAGATCTTGAAGGAACATGAAGAAGAAAGTGATGAAAAGAACCCAAAGGATTTGATGGATATTCTCTTGGAAATTCACCAAGATGATAATGCTGCAGTCAAGATCACAAGAACCCATATCAAAGCATTTATTATGGATCTTTTCATGGCCGGTACTGACACTTCGTCAGTGGCCATGCAATGGACAATGGCTGAACTCATCAACCATCCTCAAGTGTTCAAAAGGGTTAGAGAGGAGATTGAATCACTGGTTGGAACATCAGGACGACTTGTAGAAGAAGAAGACATCCCTCAACTCCCTTATTTGCAAGCTGTTGTAAAAGAAACTTTGAGGCTCCACCCACCAGCCCCAGTTATAATAAGAGAATGTCGTCAAAGTTGCAAAATTAGAGGCTATGATGTGCCACAAAAAACAAGTGTGGCAGTCAATCTTTATGCTATCATGAGAGACCCTGAAGTGTGGAGTGAACCAAACGAATTTCGTCTGGAGAGGTTTTTGACTTCGTCCAATCAAGAGACAGATTCAAACTCGAACCAAATGGAGGCCAAGGGACAGAGTTTCGACTTCATTCCATTCGGGGGTGGAAGGAGAGCATGCCCCGGTGCGACGTTGGCATTTAACATGATGAACACAACAATGGCAACCCTAGTTCAGTGCTTTGATTGGAAGGTGGTTGGAGATGCAAGTGGGGAAGAAGCTAAGGTTGATATGAGACCGGGACAAGGCTTAACTTTAGGCATGGCCAACCCTCTTTTGCTTGTTCCTATTTTACATTTTGATGCATTTGGTGCTGATTAA | 1560 | 49.87 | MAEIQSFVFLSILFFLSINLIRSIFTRTAVKSTALRLPPSPPSLPLIGHLHLLSPALCNSFRRLSDRYGPLLYLRLGASRCLVVSSAPIAAEIFKSHDVVFASRPILAFADKLYYGKSGFVTAPYGDYWRFMKKVCVTELLGVRQLERSQGVRREEIRRFVSRIAAHSRVKEAVDIGAELMRLTNNATCRMVMSTACSGEKNDAERIRYLVKEAMEVVTQICFGDVLGPLKNLGFLLYGKRALDVGRSSDELMEKILKEHEEESDEKNPKDLMDILLEIHQDDNAAVKITRTHIKAFIMDLFMAGTDTSSVAMQWTMAELINHPQVFKRVREEIESLVGTSGRLVEEEDIPQLPYLQAVVKETLRLHPPAPVIIRECRQSCKIRGYDVPQKTSVAVNLYAIMRDPEVWSEPNEFRLERFLTSSNQETDSNSNQMEAKGQSFDFIPFGGGRRACPGATLAFNMMNTTMATLVQCFDWKVVGDASGEEAKVDMRPGQGLTLGMANPLLLVPILHFDAFGAD | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 5635826 | 5639660 | - | Maker00038605 | Lcy12g0465 | 648528 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g0465 | 519 | CDD | CYP93 | 69 | 509 | - | - | |
| Lcy12g0465 | 519 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy12g0465 | 519 | Pfam | Cytochrome P450 | 38 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | P450 superfamily signature | 304 | 321 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | P450 superfamily signature | 358 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | FunFam | Cytochrome P450 family protein | 29 | 507 | - | - | |
| Lcy12g0465 | 519 | Gene3D | Cytochrome P450 | 24 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | SUPERFAMILY | Cytochrome P450 | 34 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | E-class P450 group I signature | 313 | 339 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | E-class P450 group I signature | 357 | 375 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | E-class P450 group I signature | 65 | 84 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | E-class P450 group I signature | 293 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | E-class P450 group I signature | 89 | 110 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PRINTS | E-class P450 group I signature | 397 | 421 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0465 | 519 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 16 | 509 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0465 | Lcy-Chr12:5635826 | Lcy12g0467 | Lcy-Chr12:5661839 | 0 | dispersed | |
| Lcy5g0641 | Lcy-Chr5:7917117 | Lcy12g0465 | Lcy-Chr12:5635826 | 1.44E-67 | dispersed | |
| Lcy5g0643 | Lcy-Chr5:7937647 | Lcy12g0465 | Lcy-Chr12:5635826 | 2.37E-67 | dispersed | |
| Lcy12g0465 | Lcy-Chr12:5635826 | Lcy12g0466 | Lcy-Chr12:5645683 | 1.25E-117 | tandem | |
| Lcy12g0465 | Lcy-Chr12:5635826 | Lcy3g1930 | Lcy-Chr3:46486595 | 2.16E-182 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g0465 | K23814 | - | vvi:100247724 | 612.453 |