Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0465 ATGGCAGAAATCCAATCCTTCGTATTCCTCTCGATTCTCTTTTTCCTCTCCATTAACCTAATCCGATCCATCTTCACCAGAACCGCCGTCAAATCCACCGCCCTCCGCCTCCCCCCGAGTCCGCCGTCGCTGCCGCTCATCGGCCACCTCCACCTCCTCTCGCCGGCGCTTTGCAATTCCTTCCGCCGCCTCTCCGATCGGTACGGCCCGCTCCTCTACCTCCGCCTCGGCGCCTCCCGCTGCCTCGTCGTCTCGTCGGCGCCGATCGCCGCCGAAATCTTCAAGTCGCACGACGTCGTTTTCGCCTCCCGTCCGATTCTGGCCTTCGCCGATAAGCTGTACTACGGAAAATCGGGGTTCGTGACGGCGCCGTACGGCGATTACTGGAGGTTCATGAAGAAGGTGTGCGTGACGGAGCTTCTCGGCGTCCGGCAACTGGAGCGGTCGCAGGGCGTCCGCCGAGAAGAAATCCGGCGGTTTGTGTCGAGAATCGCGGCGCATTCTCGGGTGAAGGAGGCTGTGGACATCGGCGCAGAGCTCATGAGACTGACGAACAATGCGACTTGCAGGATGGTGATGAGCACAGCATGCTCGGGAGAAAAGAACGACGCAGAAAGAATACGATATTTAGTGAAGGAAGCAATGGAGGTAGTTACACAGATATGCTTTGGAGATGTATTGGGGCCATTGAAGAATTTGGGATTCTTGCTTTATGGGAAGAGGGCTCTTGATGTTGGCAGAAGTTCTGATGAACTAATGGAGAAGATCTTGAAGGAACATGAAGAAGAAAGTGATGAAAAGAACCCAAAGGATTTGATGGATATTCTCTTGGAAATTCACCAAGATGATAATGCTGCAGTCAAGATCACAAGAACCCATATCAAAGCATTTATTATGGATCTTTTCATGGCCGGTACTGACACTTCGTCAGTGGCCATGCAATGGACAATGGCTGAACTCATCAACCATCCTCAAGTGTTCAAAAGGGTTAGAGAGGAGATTGAATCACTGGTTGGAACATCAGGACGACTTGTAGAAGAAGAAGACATCCCTCAACTCCCTTATTTGCAAGCTGTTGTAAAAGAAACTTTGAGGCTCCACCCACCAGCCCCAGTTATAATAAGAGAATGTCGTCAAAGTTGCAAAATTAGAGGCTATGATGTGCCACAAAAAACAAGTGTGGCAGTCAATCTTTATGCTATCATGAGAGACCCTGAAGTGTGGAGTGAACCAAACGAATTTCGTCTGGAGAGGTTTTTGACTTCGTCCAATCAAGAGACAGATTCAAACTCGAACCAAATGGAGGCCAAGGGACAGAGTTTCGACTTCATTCCATTCGGGGGTGGAAGGAGAGCATGCCCCGGTGCGACGTTGGCATTTAACATGATGAACACAACAATGGCAACCCTAGTTCAGTGCTTTGATTGGAAGGTGGTTGGAGATGCAAGTGGGGAAGAAGCTAAGGTTGATATGAGACCGGGACAAGGCTTAACTTTAGGCATGGCCAACCCTCTTTTGCTTGTTCCTATTTTACATTTTGATGCATTTGGTGCTGATTAA 1560 49.87 MAEIQSFVFLSILFFLSINLIRSIFTRTAVKSTALRLPPSPPSLPLIGHLHLLSPALCNSFRRLSDRYGPLLYLRLGASRCLVVSSAPIAAEIFKSHDVVFASRPILAFADKLYYGKSGFVTAPYGDYWRFMKKVCVTELLGVRQLERSQGVRREEIRRFVSRIAAHSRVKEAVDIGAELMRLTNNATCRMVMSTACSGEKNDAERIRYLVKEAMEVVTQICFGDVLGPLKNLGFLLYGKRALDVGRSSDELMEKILKEHEEESDEKNPKDLMDILLEIHQDDNAAVKITRTHIKAFIMDLFMAGTDTSSVAMQWTMAELINHPQVFKRVREEIESLVGTSGRLVEEEDIPQLPYLQAVVKETLRLHPPAPVIIRECRQSCKIRGYDVPQKTSVAVNLYAIMRDPEVWSEPNEFRLERFLTSSNQETDSNSNQMEAKGQSFDFIPFGGGRRACPGATLAFNMMNTTMATLVQCFDWKVVGDASGEEAKVDMRPGQGLTLGMANPLLLVPILHFDAFGAD 519
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 5635826 5639660 - Maker00038605 Lcy12g0465 648528
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0465 519 CDD CYP93 69 509 - -
Lcy12g0465 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy12g0465 519 Pfam Cytochrome P450 38 480 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 FunFam Cytochrome P450 family protein 29 507 - -
Lcy12g0465 519 Gene3D Cytochrome P450 24 505 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 SUPERFAMILY Cytochrome P450 34 509 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0465 519 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 16 509 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0465 Lcy-Chr12:5635826 Lcy12g0467 Lcy-Chr12:5661839 0 dispersed
Lcy5g0641 Lcy-Chr5:7917117 Lcy12g0465 Lcy-Chr12:5635826 1.44E-67 dispersed
Lcy5g0643 Lcy-Chr5:7937647 Lcy12g0465 Lcy-Chr12:5635826 2.37E-67 dispersed
Lcy12g0465 Lcy-Chr12:5635826 Lcy12g0466 Lcy-Chr12:5645683 1.25E-117 tandem
Lcy12g0465 Lcy-Chr12:5635826 Lcy3g1930 Lcy-Chr3:46486595 2.16E-182 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0465 K23814 - vvi:100247724 612.453