Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g0488 | ATGGAGTTGGGTTTGAGATTAGGCGATGGTCCTCCATTTGGGTTCCCTCAGAAGCCTCCAAACCCCACTGTTTCTCACAGAGGCCTCGATTTTTGCCTTGCTTTCGAACAAAATGCACAAACCCACAACAAAAACGACGTCGTTGCAACAATTTTTTATCCTCCCCCACCGTCTCCGCCGCCACCGCCGCCGCCTGTTCTTCACCTCGACCTTCTTCCTCCTACTCCTCTCGCCGCCTCTCGCCGATCTTCTCAAACTGATGCTTCAGAAGGAGCAGCAGCTGTTTTGAGCGATGTGATAAGCGCAGCGCCACCTTCATCGACGGCGGAGGGCGGCGAATCGCCAAGAAAGGCAATAGTGTGCTCATCATTGGAACTGGAGTTGGAGAAGTACGGCGGCGGAGCGGCGGCGGGAAGCGGCGGGGGATTTGAAGATAGCGAGAGAGGTTGGTGTCGAGGCAGCGATGAAGAGGATCAGAATTTGGGATCTCGAAAAAAACTGCGGCTTTCGAGAGAACAGTCGGCGTTTCTTGAAGAAAGCTTCAAAGAACACCATACGCTTTACCCTAAGCAAAAGCTAGAACTTGCAAGAAGATTAAATCTTCGTCCTCGCCAAGTAGAAGTCTGGTTTCAAAACAGACGAGCAAGAACGAAGCTGAAGCAAACGGAAGTCGACTGTGAATACTTGAAGAAATGCTGCGAAACTCTGACCCAACAGAACAGAAAGCTTCAAAAGGAGCTTCAAGATTTAAAAGCCTTGAAAACCACCGATTCCCTCTTCATGCACTTGCCCGCCACCACTCTCACCATGTGCGCGTCTTGTGAACGCGCCGCCGCCGACTCCAAGGCTTCTGGGTTTTCCTTTTCAAGAACTGGGTCGTCTCCGTTTTCACCAACCGATCCCTCTGCAGAGAATAATAATTAG | 924 | 51.08 | MELGLRLGDGPPFGFPQKPPNPTVSHRGLDFCLAFEQNAQTHNKNDVVATIFYPPPPSPPPPPPPVLHLDLLPPTPLAASRRSSQTDASEGAAAVLSDVISAAPPSSTAEGGESPRKAIVCSSLELELEKYGGGAAAGSGGGFEDSERGWCRGSDEEDQNLGSRKKLRLSREQSAFLEESFKEHHTLYPKQKLELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTQQNRKLQKELQDLKALKTTDSLFMHLPATTLTMCASCERAAADSKASGFSFSRTGSSPFSPTDPSAENNN | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5898735 | 5903366 | - | Maker00038873 | Lcy12g0488 | 648551 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g0488 | 307 | MobiDBLite | consensus disorder prediction | 53 | 71 | - | - | |
Lcy12g0488 | 307 | SUPERFAMILY | Homeodomain-like | 158 | 221 | IPR009057 | - | |
Lcy12g0488 | 307 | MobiDBLite | consensus disorder prediction | 284 | 307 | - | - | |
Lcy12g0488 | 307 | Pfam | Homeobox associated leucine zipper | 220 | 254 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy12g0488 | 307 | ProSiteProfiles | 'Homeobox' domain profile. | 160 | 220 | IPR001356 | GO:0003677(InterPro) | |
Lcy12g0488 | 307 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 28 | 289 | IPR050762 | - | |
Lcy12g0488 | 307 | SMART | HOX_1 | 162 | 224 | IPR001356 | GO:0003677(InterPro) | |
Lcy12g0488 | 307 | SMART | halz | 220 | 263 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy12g0488 | 307 | MobiDBLite | consensus disorder prediction | 134 | 165 | - | - | |
Lcy12g0488 | 307 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lcy12g0488 | 307 | MobiDBLite | consensus disorder prediction | 148 | 165 | - | - | |
Lcy12g0488 | 307 | MobiDBLite | consensus disorder prediction | 53 | 92 | - | - | |
Lcy12g0488 | 307 | Pfam | Homeodomain | 164 | 218 | IPR001356 | GO:0003677(InterPro) | |
Lcy12g0488 | 307 | Coils | Coil | 233 | 256 | - | - | |
Lcy12g0488 | 307 | CDD | homeodomain | 164 | 221 | IPR001356 | GO:0003677(InterPro) | |
Lcy12g0488 | 307 | ProSitePatterns | 'Homeobox' domain signature. | 195 | 218 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lcy12g0488 | 307 | Gene3D | - | 168 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0488 | Lcy-Chr12:5898735 | Lcy5g0586 | Lcy-Chr5:6679979 | 1.33E-58 | dispersed | |
Lcy12g0488 | Lcy-Chr12:5898735 | Lcy3g1945 | Lcy-Chr3:46602999 | 4.76E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19233 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g0488 | K09338 | - | csv:101208907 | 230.335 |