Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0488 ATGGAGTTGGGTTTGAGATTAGGCGATGGTCCTCCATTTGGGTTCCCTCAGAAGCCTCCAAACCCCACTGTTTCTCACAGAGGCCTCGATTTTTGCCTTGCTTTCGAACAAAATGCACAAACCCACAACAAAAACGACGTCGTTGCAACAATTTTTTATCCTCCCCCACCGTCTCCGCCGCCACCGCCGCCGCCTGTTCTTCACCTCGACCTTCTTCCTCCTACTCCTCTCGCCGCCTCTCGCCGATCTTCTCAAACTGATGCTTCAGAAGGAGCAGCAGCTGTTTTGAGCGATGTGATAAGCGCAGCGCCACCTTCATCGACGGCGGAGGGCGGCGAATCGCCAAGAAAGGCAATAGTGTGCTCATCATTGGAACTGGAGTTGGAGAAGTACGGCGGCGGAGCGGCGGCGGGAAGCGGCGGGGGATTTGAAGATAGCGAGAGAGGTTGGTGTCGAGGCAGCGATGAAGAGGATCAGAATTTGGGATCTCGAAAAAAACTGCGGCTTTCGAGAGAACAGTCGGCGTTTCTTGAAGAAAGCTTCAAAGAACACCATACGCTTTACCCTAAGCAAAAGCTAGAACTTGCAAGAAGATTAAATCTTCGTCCTCGCCAAGTAGAAGTCTGGTTTCAAAACAGACGAGCAAGAACGAAGCTGAAGCAAACGGAAGTCGACTGTGAATACTTGAAGAAATGCTGCGAAACTCTGACCCAACAGAACAGAAAGCTTCAAAAGGAGCTTCAAGATTTAAAAGCCTTGAAAACCACCGATTCCCTCTTCATGCACTTGCCCGCCACCACTCTCACCATGTGCGCGTCTTGTGAACGCGCCGCCGCCGACTCCAAGGCTTCTGGGTTTTCCTTTTCAAGAACTGGGTCGTCTCCGTTTTCACCAACCGATCCCTCTGCAGAGAATAATAATTAG 924 51.08 MELGLRLGDGPPFGFPQKPPNPTVSHRGLDFCLAFEQNAQTHNKNDVVATIFYPPPPSPPPPPPPVLHLDLLPPTPLAASRRSSQTDASEGAAAVLSDVISAAPPSSTAEGGESPRKAIVCSSLELELEKYGGGAAAGSGGGFEDSERGWCRGSDEEDQNLGSRKKLRLSREQSAFLEESFKEHHTLYPKQKLELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTQQNRKLQKELQDLKALKTTDSLFMHLPATTLTMCASCERAAADSKASGFSFSRTGSSPFSPTDPSAENNN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5898735 5903366 - Maker00038873 Lcy12g0488 648551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0488 307 MobiDBLite consensus disorder prediction 53 71 - -
Lcy12g0488 307 SUPERFAMILY Homeodomain-like 158 221 IPR009057 -
Lcy12g0488 307 MobiDBLite consensus disorder prediction 284 307 - -
Lcy12g0488 307 Pfam Homeobox associated leucine zipper 220 254 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0488 307 ProSiteProfiles 'Homeobox' domain profile. 160 220 IPR001356 GO:0003677(InterPro)
Lcy12g0488 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 289 IPR050762 -
Lcy12g0488 307 SMART HOX_1 162 224 IPR001356 GO:0003677(InterPro)
Lcy12g0488 307 SMART halz 220 263 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0488 307 MobiDBLite consensus disorder prediction 134 165 - -
Lcy12g0488 307 MobiDBLite consensus disorder prediction 1 22 - -
Lcy12g0488 307 MobiDBLite consensus disorder prediction 148 165 - -
Lcy12g0488 307 MobiDBLite consensus disorder prediction 53 92 - -
Lcy12g0488 307 Pfam Homeodomain 164 218 IPR001356 GO:0003677(InterPro)
Lcy12g0488 307 Coils Coil 233 256 - -
Lcy12g0488 307 CDD homeodomain 164 221 IPR001356 GO:0003677(InterPro)
Lcy12g0488 307 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy12g0488 307 Gene3D - 168 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0488 Lcy-Chr12:5898735 Lcy5g0586 Lcy-Chr5:6679979 1.33E-58 dispersed
Lcy12g0488 Lcy-Chr12:5898735 Lcy3g1945 Lcy-Chr3:46602999 4.76E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19233 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0488 K09338 - csv:101208907 230.335