Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0501 ATGGCCGTGGAAACTCTTCAGAAGGAGTTCATTTTCCGGTCGAAATTGCCGGATATTTACATTCCGAAGCACCTTCCTCTGCATTCGTATTGCCTGCAGGACAATACGGCGAAGATCGGCCACCGGACCTGTCTTGTCAACGGCGTCACAGGCGAATCCTTCACCTACGACGACGTCGATCTCGCCGCTCGCAAGGTCGCCTCCGGATTGAACAAACTCGGCATTGCAAAAGGCGATGTGATCATGCTCCTCCTCCCGAACTCGACGGAATTCGTCTTCGCTTTCCTCGGCGCGTCGTACCGCGGCGCGATCATGACGGCGGCGAATCCTTTCTTCACGGCGGCGGAGATCGCGAAGCAAGCGAAAGGATCGAAGGCGAAATTGATCGTGACGCAAGCGTCGTATTACGAGAAAGTGAAGGATATAACAGAGGAGTTACCTGATGTTAAGATCATGACCGTGGATTCTCCGCCGGACGGTTGTTTGTCGTTCGCCGATTTAATCCAGGCCGACGAAGGCGAGGTTCCGGCGGTGGAGATCCATCCGGACGACGTCGTTGCGCTGCCGTACTCCTCTGGAACCACCGGATTGCCGAAAGGAGTGATGCTAACGCATAAAGGTCTAGTGACGAGTGTGGCTCAGCAAGTGGACGGCGAAAATCCGAATCTGTACTTCCGAAACGAGGATGTGATTTTGTGCGTTTTGCCGCTTTTCCATATCTATTCGCTTAATTCGGTTCTGCTCTGCGGATTGCGAGCCGGTGCGACGATTCTGATTATGCCTAAATTCGAGATCGGTTCGCTTTTGAAATTGGTGGAGAAATACAGAGTTTCGATTGCTCCGATTGTGCCGCCGATCGTTCTCGCCATTGCGAAGTCGCCGGACCTCGATAAGTACGATCTGTCGTCTATCAGAATGATCAAATCCGGCGGAGCTCCGCTCGGTAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCCAAGGCAGTGCTCGGCCAGGGATACGGAATGACGGAGGCCGGTCCAGTGTTAACAATGGGCTTGGCATTTGCAAAGGAACCGTTTCCAATGAAACCAGGCGCCTGCGGCACCGTCGTGAGGAACGCCGAGATGAAGATCGTCGACACCGAAAACGGCGGCTCGTTGCCACGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAGATCATGAAAGGCTATTTGAACAATCCGGAGGCGACGGCCGCCACCATCGACGAGGACGGCTGGTTGCACACCGGCGACATCGGCTTCATCGACGACGACGACGAGCTCTTCATCGTCGATCGGTTGAAGGAGCTGATCAAGTACAAGGGATTCCAAGTGGCTCCGGCGGAACTCGAAGCTCTTCTGCTCACTCATCCGGTCATCTCCGATGCCGCCGTCGTTCCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCATTCGTGGTGAAATTGAAGAACTCTGAAGTTACTGAGGATGAAATTAAACAATTTATTTCCAAACAGGTGGTGTTCTACAAGAGAATCAACCGGGTGTTTTTCATAGACGCAATTCCGAAATCACCCTCGGGCAAGATCTTAAGGAAGGAGTTGAGGGCAAAGTTGGCAACTGATTTTCCAAATTCTAATTAA 1641 52.65 MAVETLQKEFIFRSKLPDIYIPKHLPLHSYCLQDNTAKIGHRTCLVNGVTGESFTYDDVDLAARKVASGLNKLGIAKGDVIMLLLPNSTEFVFAFLGASYRGAIMTAANPFFTAAEIAKQAKGSKAKLIVTQASYYEKVKDITEELPDVKIMTVDSPPDGCLSFADLIQADEGEVPAVEIHPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFRNEDVILCVLPLFHIYSLNSVLLCGLRAGATILIMPKFEIGSLLKLVEKYRVSIAPIVPPIVLAIAKSPDLDKYDLSSIRMIKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTENGGSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDEDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLATDFPNSN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6031207 6035376 - Maker00038653 Lcy12g0501 648564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0501 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Lcy12g0501 546 Gene3D - 439 541 IPR045851 -
Lcy12g0501 546 CDD 4CL 21 534 - -
Lcy12g0501 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Lcy12g0501 546 Pfam AMP-binding enzyme 34 402 IPR000873 -
Lcy12g0501 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Lcy12g0501 546 Gene3D - 5 438 IPR042099 -
Lcy12g0501 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Lcy12g0501 546 SUPERFAMILY Acetyl-CoA synthetase-like 20 540 - -
Lcy12g0501 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0389 Lcy-Chr11:6730451 Lcy12g0501 Lcy-Chr12:6031207 2.77E-113 dispersed
Lcy12g0501 Lcy-Chr12:6031207 Lcy3g1968 Lcy-Chr3:46826853 5.79E-290 dispersed
Lcy1g0119 Lcy-Chr1:1021362 Lcy12g0501 Lcy-Chr12:6031207 3.41E-28 transposed
Lcy4g1684 Lcy-Chr4:42518512 Lcy12g0501 Lcy-Chr12:6031207 2.77E-242 transposed
Lcy7g0035 Lcy-Chr7:292427 Lcy12g0501 Lcy-Chr12:6031207 1.06E-136 transposed
Lcy12g0501 Lcy-Chr12:6031207 Lcy3g1966 Lcy-Chr3:46803093 2.23E-287 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0501 K01904 - csv:101215427 974.156