Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0509 ATGGAGAAGAAGACCTATCCGATAGGTGAAGATCATTACGTTCTGTATGAGGAGGTTGGACAGGGGGTGAGTGCTTCGGTTCACCGTGCTCTGTGTAAACCTCTTAACGAGATCGTCGCCGTCAAGATCCTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGATCACCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATAATTTGTGGATTGTTATGCCCTACATGGCTGGGGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTACGAGAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCATGCCTTTTTGATTCAGGTGATAGGCAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGCCTTGATTATGAGAGAGATAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAAGCAAGCCCGTTCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCGCTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTGTCACAGAATGAATATAAACGAGGAATTAGTGGATGGAACTTCAATCTCGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCAGTGAAGGAGGGAGCTCAAATTCCTTATGTGCTCTTGATGTGCAAGAAAAGAGATTACAATGCCAAAATTCTTCAGAAATTTCAGATACTGAAGAGAATGGCTTGCTGCGGAGACAACCCTCCATGAAAATTAATGATACAGTAGATGGTAAAAAGTCTAGCAATGATTCAACTATTACTGGTTCTTCCTCTCAACATCATTCACCCCGCCAAGATAATCAAACTGAGAATGGATCCAGTGAAGAGCTTTATTTGGAGAACAGCAAAAAATTTTTGGGGAATACTACTAATACTAGCCAACATAAAAGAAGTATTTCTTCTAATCCCGCTATTCAACAAGAAGGCAGTTCGCCACTGAACAGAAGAGAGAGTAATGAGACAGAGAAGAATGCTGCAAATGGTGGCAGTGTTGCAATTGGAAACACTTCTCAGGCGGTAGATGATGTGCTTTCTGATTCTTATTCTAAAGATTCCAAGTCATCATTAACAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAGGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGATAAGGCAGTTGCATCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCGACTCCTGCTACTCCTCTACCTTCTAATCTACCAAGTCCTCTACTGACACCTCTACCTTCATCTGATGCTATTCCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCACAATCGGAGAATTTCCAGCGGAGGGTGTCGTTGATGTCTCAGGGGCACATATAGCAACAATGGAGAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTAATTAACGAAGTAACTGAATTACAGTGGAGGATATTACGTGCGAAAGATGAAATCCAAAGATTAAAATTAAACAATGCAGGTTAA 2028 41.12 MEKKTYPIGEDHYVLYEEVGQGVSASVHRALCKPLNEIVAVKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMPYMAGGSCLHILKAAYPDGFEEVVIATILREAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSSDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEGGSSNSLCALDVQEKRLQCQNSSEISDTEENGLLRRQPSMKINDTVDGKKSSNDSTITGSSSQHHSPRQDNQTENGSSEELYLENSKKFLGNTTNTSQHKRSISSNPAIQQEGSSPLNRRESNETEKNAANGGSVAIGNTSQAVDDVLSDSYSKDSKSSLTSPATNDEEQDEKAKAPVIQQKGRFKVTSENVDVDKAVASPILQKSHSMQVITSTPATPLPSNLPSPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQITIGEFPAEGVVDVSGAHIATMEKSLLEAAHEREKDLINEVTELQWRILRAKDEIQRLKLNNAG 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6116736 6125395 + Maker00038830 Lcy12g0509 648572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0509 675 MobiDBLite consensus disorder prediction 385 420 - -
Lcy12g0509 675 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Lcy12g0509 675 MobiDBLite consensus disorder prediction 432 459 - -
Lcy12g0509 675 MobiDBLite consensus disorder prediction 362 420 - -
Lcy12g0509 675 ProSiteProfiles Protein kinase domain profile. 13 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0509 675 MobiDBLite consensus disorder prediction 468 506 - -
Lcy12g0509 675 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Lcy12g0509 675 Coils Coil 638 672 - -
Lcy12g0509 675 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lcy12g0509 675 FunFam serine/threonine-protein kinase OSR1 94 271 - -
Lcy12g0509 675 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 674 IPR047173 GO:0043539(InterPro)
Lcy12g0509 675 SUPERFAMILY Protein kinase-like (PK-like) 11 256 IPR011009 -
Lcy12g0509 675 MobiDBLite consensus disorder prediction 432 521 - -
Lcy12g0509 675 Gene3D Transferase(Phosphotransferase) domain 1 118 270 - -
Lcy12g0509 675 Pfam Protein kinase domain 122 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0509 675 Pfam Protein kinase domain 13 113 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1923 Lcy-Chr10:43335639 Lcy12g0509 Lcy-Chr12:6116736 5.73E-166 dispersed
Lcy11g1629 Lcy-Chr11:40112513 Lcy12g0509 Lcy-Chr12:6116736 2.85E-86 dispersed
Lcy12g0509 Lcy-Chr12:6116736 Lcy6g2295 Lcy-Chr6:47648500 2.11E-117 dispersed
Lcy12g0509 Lcy-Chr12:6116736 Lcy5g1703 Lcy-Chr5:39519352 1.40E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65492 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0509 K08835 - csv:101211076 1083.17