Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0509 ATGGAGAAGAAGACCTATCCGATAGGTGAAGATCATTACGTTCTGTATGAGGAGGTTGGACAGGGGGTGAGTGCTTCGGTTCACCGTGCTCTGTGTAAACCTCTTAACGAGATCGTCGCCGTCAAGATCCTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGATCACCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATAATTTGTGGATTGTTATGCCCTACATGGCTGGGGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTACGAGAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCATGCCTTTTTGATTCAGGTGATAGGCAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGCCTTGATTATGAGAGAGATAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAAGCAAGCCCGTTCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCGCTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTGTCACAGAATGAATATAAACGAGGAATTAGTGGATGGAACTTCAATCTCGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCAGTGAAGGAGGGAGCTCAAATTCCTTATGTGCTCTTGATGTGCAAGAAAAGAGATTACAATGCCAAAATTCTTCAGAAATTTCAGATACTGAAGAGAATGGCTTGCTGCGGAGACAACCCTCCATGAAAATTAATGATACAGTAGATGGTAAAAAGTCTAGCAATGATTCAACTATTACTGGTTCTTCCTCTCAACATCATTCACCCCGCCAAGATAATCAAACTGAGAATGGATCCAGTGAAGAGCTTTATTTGGAGAACAGCAAAAAATTTTTGGGGAATACTACTAATACTAGCCAACATAAAAGAAGTATTTCTTCTAATCCCGCTATTCAACAAGAAGGCAGTTCGCCACTGAACAGAAGAGAGAGTAATGAGACAGAGAAGAATGCTGCAAATGGTGGCAGTGTTGCAATTGGAAACACTTCTCAGGCGGTAGATGATGTGCTTTCTGATTCTTATTCTAAAGATTCCAAGTCATCATTAACAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAGGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGATAAGGCAGTTGCATCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCGACTCCTGCTACTCCTCTACCTTCTAATCTACCAAGTCCTCTACTGACACCTCTACCTTCATCTGATGCTATTCCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCACAATCGGAGAATTTCCAGCGGAGGGTGTCGTTGATGTCTCAGGGGCACATATAGCAACAATGGAGAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTAATTAACGAAGTAACTGAATTACAGTGGAGGATATTACGTGCGAAAGATGAAATCCAAAGATTAAAATTAAACAATGCAGGTTAA 2028 41.12 MEKKTYPIGEDHYVLYEEVGQGVSASVHRALCKPLNEIVAVKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMPYMAGGSCLHILKAAYPDGFEEVVIATILREAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSSDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEGGSSNSLCALDVQEKRLQCQNSSEISDTEENGLLRRQPSMKINDTVDGKKSSNDSTITGSSSQHHSPRQDNQTENGSSEELYLENSKKFLGNTTNTSQHKRSISSNPAIQQEGSSPLNRRESNETEKNAANGGSVAIGNTSQAVDDVLSDSYSKDSKSSLTSPATNDEEQDEKAKAPVIQQKGRFKVTSENVDVDKAVASPILQKSHSMQVITSTPATPLPSNLPSPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQITIGEFPAEGVVDVSGAHIATMEKSLLEAAHEREKDLINEVTELQWRILRAKDEIQRLKLNNAG 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6116736 6125395 + Maker00038830 Lcy12g0509 648572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0509 675 MobiDBLite consensus disorder prediction 385 420 - -
Lcy12g0509 675 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Lcy12g0509 675 MobiDBLite consensus disorder prediction 432 459 - -
Lcy12g0509 675 MobiDBLite consensus disorder prediction 362 420 - -
Lcy12g0509 675 ProSiteProfiles Protein kinase domain profile. 13 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0509 675 MobiDBLite consensus disorder prediction 468 506 - -
Lcy12g0509 675 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Lcy12g0509 675 Coils Coil 638 672 - -
Lcy12g0509 675 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lcy12g0509 675 FunFam serine/threonine-protein kinase OSR1 94 271 - -
Lcy12g0509 675 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 674 IPR047173 GO:0043539(InterPro)
Lcy12g0509 675 SUPERFAMILY Protein kinase-like (PK-like) 11 256 IPR011009 -
Lcy12g0509 675 MobiDBLite consensus disorder prediction 432 521 - -
Lcy12g0509 675 Gene3D Transferase(Phosphotransferase) domain 1 118 270 - -
Lcy12g0509 675 Pfam Protein kinase domain 122 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0509 675 Pfam Protein kinase domain 13 113 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0509 K08835 - - csv:101211076 1083.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1923 Lcy-Chr10:43335639 Lcy12g0509 Lcy-Chr12:6116736 5.73E-166 dispersed
Lcy11g1629 Lcy-Chr11:40112513 Lcy12g0509 Lcy-Chr12:6116736 2.85E-86 dispersed
Lcy12g0509 Lcy-Chr12:6116736 Lcy6g2295 Lcy-Chr6:47648500 2.11E-117 dispersed
Lcy12g0509 Lcy-Chr12:6116736 Lcy5g1703 Lcy-Chr5:39519352 1.40E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1314 . 1 697 MAP Kinase Kinase Kinase Kinase AT1G53165 62.0 1.8e-220 763.1
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT1G53165 51.4 1.6e-64 245.0
Lcy9g1314 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.6 2.0e-232 802.7
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT3G15220 51.0 9.6e-65 245.7
Lcy7g0345 . 4 909 MAP Kinase Kinase Kinase Kinase AT1G69220 55.9 5.1e-235 811.6
Lcy9g1314 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.1e-67 253.8
Lcy10g1923 . 122 686 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 5.8e-216 748.0
Lcy6g2295 . 7 853 MAP Kinase Kinase Kinase Kinase AT4G24100 54.8 6.9e-231 797.7
Lcy10g1923 . 127 514 MAP Kinase Kinase Kinase Kinase AT4G24100 60.2 1.6e-134 477.6
Lcy6g2295 . 11 854 MAP Kinase Kinase Kinase Kinase AT4G10730 55.0 2.3e-231 799.3
Lcy10g1923 . 122 490 MAP Kinase Kinase Kinase Kinase AT1G70430 69.6 3.0e-147 519.6
Lcy12g0509 . 1 658 MAP Kinase Kinase Kinase Kinase AT1G79640 57.7 7.0e-206 714.5
Lcy10g1923 . 127 683 MAP Kinase Kinase Kinase Kinase AT1G79640 50.9 5.4e-150 528.9
Lcy10g1923 . 122 455 MAP Kinase Kinase Kinase Kinase AT1G23700 58.5 5.6e-104 375.6
Lcy11g1629 . 33 492 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 7.3e-144 508.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65492 None None None None Lcy PK