Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0512 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCTGCATCTGCTATAAATCTCAGGGAGGCTATTAATAATCGACCATCAGCCTCTGGAAGGGTGCCTTTTCAAGGTGTGGATGTTCTAGGACTGAAGAAGCGAGGCCAGGGACTTAGATCTTGGATTCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACTATGATGCGTCGTTGTGATCTACCTGCACGTGATTTACGCTTGCTTGATCCTTTATTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTGGTTAATCTAGAGCAGATTCGATGTATTATAACAGCTGACGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTATTGCAGTATGTGGTAGAGCTACAAAGGCGGTTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGATGGAAATCATGGAGCTGACTTAAATCGAAGAAGGGGAAGTAGGAATTTCGATAATGTATTTGGAAATACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCAAAAATCAGTACACTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATAAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCATCTATTTCTGCTCCCGTTTCTCCTGTATCTTCACCACCTGATACTCGCAAGCTTGAGAAGAGCCTGAGCATTGCAAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATTCAATTTGAGCTTCTACTCACAACTGCAACATTCGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGACGCATTCAAGTGGGTCCTTGTAATTACAGGAGTAAGTGGAATAATCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGATTGATGCCACTTTAA 1344 41.82 MADLKERLLPPKPASAINLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKIRMESFVYGDQSVTGYRSIDGASISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLVITGVSGIIIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6182932 6186859 + Maker00038638 Lcy12g0512 648575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0512 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Lcy12g0512 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Lcy12g0512 447 FunFam Magnesium transporter MRS2-1 41 124 - -
Lcy12g0512 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Lcy12g0512 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy12g0512 447 Coils Coil 228 255 - -
Lcy12g0512 447 FunFam Magnesium transporter MRS2-1 385 445 - -
Lcy12g0512 447 Gene3D - 41 124 - -
Lcy12g0512 447 Pfam Magnesium transporter MRS2-like 326 375 - -
Lcy12g0512 447 Pfam Magnesium transporter MRS2-like 57 269 - -
Lcy12g0512 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0512 Lcy-Chr12:6182932 Lcy13g1649 Lcy-Chr13:35439573 4.76E-126 dispersed
Lcy12g0512 Lcy-Chr12:6182932 Lcy13g0329 Lcy-Chr13:3603206 9.94E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0512 K16075 - csv:101217419 821.617