Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0521 ATGGCGGGTGAGGCGGCGCCGGCGAGGAATGTTCTTTTTGGGAAATACGAAATGGGTCGTTTATTGGGGAAAGGGACCTTCGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAAAGTGTCGCCATTAAAGTGATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTCGAGCAAATCCGGCGAGAAATTTCTGTAATGGGTTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACAAAGTCCAAGGTGTATTTTGTTATGGAGTACGTTAATGGAGGCGAACTGTTTGTGAAATTGTCTCAACAAGGAAAATTGACAGAAGGTGGAGCTAGAAAGTACTTTCAGCAGCTTCTCTCCGCCGTGGACTTTTGCCACAGCCGTGGAGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTCGACGAGAATGGGAACTTGAAGGTCTCTGATTTTGGCCTCTCCGCCCTGCCGGAGCAGCTCAGGATCGACGGTTTGCTCCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTGCTCAGAAAGCGGGGCTACGACGGCGCCAAGGCGGATATTTGGTCTTGTGGGGTGGTTTTGTTTGTTTTGCTTGCTGGGACTCTGCCTTTTAGAGCTGATAATGTGATGAAGTTGTATAGGAAGATTTTCAAGGCTGAGTTTGAGTTTCCTCCTTGGTTTTCTTCAGAAGCCATGGAAATGGTTTCTAAGGTTCTTGTTGTTGATCCTGAGAAGAGGGTTTCAATGGCTGAGATAATGGAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGGAAGTGTCATTCAGTGAGAAAGATGAGTTCAACAATGAGATTTCTGAATTGGGAAATCCTAAATTCTTGTTGTCATCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAACAAGAAGAAACAAGGCTCCATTTTCACTTCAAAGTGCTCTGCTTCAGCCATTATAGCCAAGCTTCAATCTCTGGCTGTGAAGCTGAATTTCAAGGCTACTAATCTGAGGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAGGGAAGGAAAGGGAAGTTGACGGTGACGGCGGAGGTTTTCGAGGCTGCGCCCGAGCTGGCGGTCGTCGAGTTCTCGAAGTCGGCCGGTGACACTTTGGAGTACAATAAGTTCTGTGAGAAGGATGTGAGGCCTGCATTAAAGGACATAGTTTGGAGCTGGCAAGGAGAGAATGAGTGCCTATAA 1311 47.29 MAGEAAPARNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEGGARKYFQQLLSAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKRGYDGAKADIWSCGVVLFVLLAGTLPFRADNVMKLYRKIFKAEFEFPPWFSSEAMEMVSKVLVVDPEKRVSMAEIMESPWFQKGFTKEVSFSEKDEFNNEISELGNPKFLLSSSPPFYNAFEFISSMSSGFDLSSLFENKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLREFKVRLQAKEEGRKGKLTVTAEVFEAAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGENECL 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6333534 6334844 + Maker00038813 Lcy12g0521 648584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0521 436 ProSiteProfiles NAF domain profile. 303 328 IPR018451 GO:0007165(InterPro)
Lcy12g0521 436 CDD CIPK_C 309 423 - -
Lcy12g0521 436 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0521 436 Pfam NAF domain 305 360 IPR004041 GO:0007165(InterPro)
Lcy12g0521 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 420 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy12g0521 436 Gene3D Transferase(Phosphotransferase) domain 1 8 303 - -
Lcy12g0521 436 SUPERFAMILY Protein kinase-like (PK-like) 12 272 IPR011009 -
Lcy12g0521 436 Gene3D Kinase associated domain 1, KA1 304 428 - -
Lcy12g0521 436 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0521 436 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
Lcy12g0521 436 FunFam Non-specific serine/threonine protein kinase 9 297 - -
Lcy12g0521 436 CDD STKc_SnRK3 15 270 - -
Lcy12g0521 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0521 436 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Lcy12g0521 436 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Lcy12g0521 436 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0521 Lcy-Chr12:6333534 Lcy2g0170 Lcy-Chr2:1345199 5.90E-167 dispersed
Lcy12g0521 Lcy-Chr12:6333534 Lcy4g2024 Lcy-Chr4:46752930 1.33E-161 wgd
Lcy12g0521 Lcy-Chr12:6333534 Lcy9g1887 Lcy-Chr9:43933927 3.19E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65494 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0521 - - - 0.0