Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0522 ATGGCTGCTGGAGGGTCTAATTCTGGGCAGCCGCAGTTCCTTGCTAGGGCTGGAGATGAGAGTTTTTCGCACGCGCCCTTGATCGAGAACCCGGAAACTGATCAGATTGTCGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGGTTTCTTGTTTCTATTGCCTATATTGATCCTGGGAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCGTGTGCTGCCCTCATCATTCAATCCTTGGCAGCAAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAATCTGAGTACCCCAAGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGCGTTCTTTTGACAGGGCTTAGTACACTGTTCCTTCTTGCGCTGCAGCAATATGGGATTAGAAAGCTCGAATTCTTGATTGCGTTTCTTGTATTGACAATTGCAATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCCGATGTCGGAGAAATTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCGGCACTGGTGCTCTCTAGGAAAATACCCCGATCTGTTTCTGGCATCAAGGAAGCTTGCAGATTTTATCTGATAGAGAGTGGCTTTGCTCTTATGGTGGCTTTCCTCATTAATGTGTCAGTCATTTCTGTTAGTGGTGCAGTTTGCTATTCCCCAGATCTAAACAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTGTTAGCATCTGGTCAGAGTTCTACGATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAATTGACGCCATGGATCAGAAACTTTTTAACCCGAAGCTTAGCAATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGTCTTCTGGGGCTGGGAAGTTGATTATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTCATTCCCCTTCTGAAGTTTACAAGCAGCAAGACCAAGATGGGACCGCATGTCAACTCCACTGCGATTACGGTACTGACATGGATCATCGGTTTCCTCATCATGACTATAAATATATACTACCTCATAACCAAATTCATCCACGTGCTTCTTCATAACGATCTCCAACTCGCAGCAGTCGTCTTCATAGGGATACTCGGATTTTCAGGCATGGCAGTATATTTAGCTGGAATTGCCTATCTAGTTCTCAGAAAGACCAAGGAGATCACTCATCTCTTAGCACTAACAACAGAAGAAAGTCAACGACTGAGCAACGAGCCGAGTAAGACATCGGGATATAATCTCCCGAGCGAAGATATAGTAAGCATGCAATTGCCTCAAAGAATTAGAACTACCAATGATGTAAACTGA 1638 42.86 MAAGGSNSGQPQFLARAGDESFSHAPLIENPETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKSEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLFLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVSGIKEACRFYLIESGFALMVAFLINVSVISVSGAVCYSPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGPHVNSTAITVLTWIIGFLIMTINIYYLITKFIHVLLHNDLQLAAVVFIGILGFSGMAVYLAGIAYLVLRKTKEITHLLALTTEESQRLSNEPSKTSGYNLPSEDIVSMQLPQRIRTTNDVN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6358353 6364173 + Maker00038862 Lcy12g0522 648585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0522 545 Pfam Natural resistance-associated macrophage protein-like 67 429 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 NCBIfam Nramp family divalent metal transporter 52 420 - -
Lcy12g0522 545 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 32 499 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0522 545 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1244 Lcy-Chr10:35098624 Lcy12g0522 Lcy-Chr12:6358353 5.67E-172 dispersed
Lcy12g0522 Lcy-Chr12:6358353 Lcy8g0849 Lcy-Chr8:30662609 1.99E-108 dispersed
Lcy12g0522 Lcy-Chr12:6358353 Lcy12g0523 Lcy-Chr12:6368431 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0522 K21398 - csv:101209649 985.326