Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0523 ATGCACGCCGTCTCATATTCTGGATTGAGGTTCCCGCAGTTCCTTGCTAGGGCTGGAGATGAGAGTTTTTCGCACGTACCCTTGATCGAGAACCCGGAAACTGATCAGATTGTCGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGGTTTCTTGTTTCTATTGCCTATATTGATCCTGGGAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCGTGTGCTGCCCTCATCATTCAATCCTTGGCAGCAAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAATCTGAGTACCCCAAGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGCGTTCTTTTGACAGGGCTTAGTACACTGTTCCTTCTTGCGCTGCAGCAATATGGGATTAGAAAGCTCGAATTCTTGATTGCGTTTCTTGTATTGACAATTGCAATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCCGATGTCGGAGAAATTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCGGCACTGGTGCTCTCTAGGAAAATACCCCGATCTGTTTCTGGCATCAAGGAAGCTTGCAGATTTTATCTGATAGAGAGTGGCTTTGCTCTTATGGTGGCTTTCTTCATTAATGTGTCAGTCATTTCTGTTAGTGGTGCAGTTTGCAATTCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTGTTAGCATCTGGTCAGAGTTCTACGATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGACGCCATGGATCAGAAACTTTTTAACCCGAAGCTTAGCAATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGTCTTCTGGGGCTGGGCAGTTGATTATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTCATTCCCCTTCTGAAGTTTACAAGCAGCAAGGCCAAGATGGGACCGCATGTCAACTCCACCGCGATTACGGTACTGACATGGATCATCGGTTTCCTCATCATGACTATAAATATATACTACCTCATAACCAAATTCATCCTCGTGCTTCTTCATAACGATCTCCAACTCGCAGCAGTCGTCTTCATAGGGATACTCGGATTTTCAAGCATGGCAGTATATTTAGCTGGAATTGCCTATCTAGTTCTCAGAAAGACCAAGGAGATCACTCATCTCTTAGCACTAACAACAGAAGAAAGTCAACGACTGAGCAACGAGCCGAGTAAGACATCGGGATATAATCTCCCGAGCGAAGATATAGTAAGCATGCAATTGCCTCAAAGAATTAGAACTACCAATGATGTAAACTGA 1641 42.66 MHAVSYSGLRFPQFLARAGDESFSHVPLIENPETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKSEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLFLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVSGIKEACRFYLIESGFALMVAFFINVSVISVSGAVCNSPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNFLTRSLAIVPSLIVAIIGGSSGAGQLIIIASMILSFELPFALIPLLKFTSSKAKMGPHVNSTAITVLTWIIGFLIMTINIYYLITKFILVLLHNDLQLAAVVFIGILGFSSMAVYLAGIAYLVLRKTKEITHLLALTTEESQRLSNEPSKTSGYNLPSEDIVSMQLPQRIRTTNDVN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6368431 6374152 + Maker00038432 Lcy12g0523 648586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0523 546 PRINTS Natural resistance-associated macrophage protein signature 400 419 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 PRINTS Natural resistance-associated macrophage protein signature 340 359 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 PRINTS Natural resistance-associated macrophage protein signature 155 174 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 PRINTS Natural resistance-associated macrophage protein signature 180 201 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 PRINTS Natural resistance-associated macrophage protein signature 368 385 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 PRINTS Natural resistance-associated macrophage protein signature 127 153 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 Pfam Natural resistance-associated macrophage protein-like 68 430 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 33 500 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 Hamap Divalent metal cation transporter MntH [mntH]. 33 456 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 47 424 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy12g0523 546 NCBIfam Nramp family divalent metal transporter 53 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0523 Lcy-Chr12:6368431 Lcy8g0849 Lcy-Chr8:30662609 2.27E-107 dispersed
Lcy12g0522 Lcy-Chr12:6358353 Lcy12g0523 Lcy-Chr12:6368431 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0523 K21398 - csv:101209649 963.37