Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0525 ATGCCGATCGATACCTCTGCAGTTTCAGGCCAAATTGTGTGTGTCACTGGCGCTGGAGGCTTCATTGCCTCTTGGCTCGTGAAGCTCCTTCTTGAAAAGGGCTACACTGTTAGAGGAACTGTCAGAAACGCAGATGATCCAAAGAATGCTCATTTGATGGACTTGCAAGGAGCTAAAGAGCGTTTGTCTTTGTTCAGTGCTGATCTTCTTGATTTTGACAGCCTCAAAGCAGCCATTATGGGTTGCGATGGTGTTTTCCACACCGCGTCTCCGGTGACCGACGATCCCGAAAAGGTGGAGCAAGCCATAATTGGGACTAAGAACGTCATGACTGCCGCCGCCGAAGCAAAAGTCCGACGGGTGGTGTTCACGTCGTTGATCGGTACCGTCTACATGAACCCTAACCGGAACCCGGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCGAAGACAATAGCAGAACAGACAGCATGGGAATTGGCAGAAGAAAAAGGAGTGGATCTTGTAGTGGTCAATCCGATGTTGGTGTTGGGACCTTTGTTGCAAGCAGGAGTGAATGCAAGTGTGGTTCACATAATGAAGTATTTGACAGGATCTGCTAAGACATATGTCAATGCAGTTCAAGGTTATGTGGATGTTAAGGATGTTGCTAAAGCTCATCTTTTAGTTTATGAAACTCCCTCAGCCTCAGGCAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTCGATATTCTTGCCATGTTGTTCCCTGAATATCCCCTTCCCACCAAGTGTTCTGATGAGGTGAATCCCAGGAAGAAACCTTACAAATACAGTGTTGAGAAACTCAAGTCATTGGGAATGGAATTCACACCAATCAAACATTGCATATATGAAACTGTGAAGAGTCTACAAGAAAAGGGTCATCTTCCTCTTCCCTCCCAATTTCAACATTGA 990 45.66 MPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNADDPKNAHLMDLQGAKERLSLFSADLLDFDSLKAAIMGCDGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEAKVRRVVFTSLIGTVYMNPNRNPDTVVDESCWSDLDFCKNTKNWYCYAKTIAEQTAWELAEEKGVDLVVVNPMLVLGPLLQAGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHRGELVDILAMLFPEYPLPTKCSDEVNPRKKPYKYSVEKLKSLGMEFTPIKHCIYETVKSLQEKGHLPLPSQFQH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6410857 6412393 + Maker00038593 Lcy12g0525 648588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0525 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 313 IPR050425 GO:0016616(PANTHER)
Lcy12g0525 329 FunFam Cinnamoyl-CoA reductase 1 4 329 - -
Lcy12g0525 329 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Lcy12g0525 329 CDD FR_SDR_e 13 298 - -
Lcy12g0525 329 Gene3D - 3 329 - -
Lcy12g0525 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 316 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0525 Lcy-Chr12:6410857 Lcy3g1996 Lcy-Chr3:47089779 2.91E-188 dispersed
Lcy12g0524 Lcy-Chr12:6400152 Lcy12g0525 Lcy-Chr12:6410857 1.94E-237 tandem
Lcy12g0525 Lcy-Chr12:6410857 Lcy12g0526 Lcy-Chr12:6419558 5.81E-231 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0525 K09753 - csv:116401668 598.586