Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0526 ATGGGATCGCAGGTCTCTTTATTAGTTCCTATTTGTGGTGCAGGCAGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCCACAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAAAGTGCAGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTCTTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGGCCCTTACCAGCCAAAGCGCCACTCGTTTTTGTGCATCCATATCTCTCTCAATTATTCAAACTATTCACCCATTTCTCTCAATCTCTTTTTCATTTCAAATCCCAAAACAAAACAAACCCTTTTCGTATATCCACCATGCCGATCGATACCTCTGCAGTTTCAGGCCAAATTGTGTGTGTCACTGGCGCTGGAGGCTTCATTGCTTCTTGGCTCGTGAAGCTCCTTCTTGAGAAGGGCTACACTGTCAGAGGAACTGTCAGAAACGCAGATGATCCAAAGAATGCTCATTTGATGGACTTGCAAGGAGCTAAAGACCGTTTGTCTTTGTTCAGTGCTGATCTTCTTGATTTTGATAGCCTTAAAGCTGCCATTATGGGCTGCGATGGCGTTTTCCACACCGCGTCTCCAGTGACCGACGATCCCGAAAAGGTGGAGCAAGCCATAATCGGGACCAAAAACGTCATGACCGCTGCTGCAGAAGCAAAAGTCCGACGGGTGGTGTTCACGTCGTCGATCGGTACCGTCTACATGAACCCTAACCGGAGCCCGGACACAGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCAAAGACAATAGCAGAACAGACAGCATGGGAATTGGCAGAAGAAAGAGGAGTGGATCTTGTAGTGATCAATCCAATGTTAGTGTTGGGACCTTTGTTGCAAGCAGGAGTGAATGCAAGTGTGGTTCACATAATGAAGTATTTGACAGGATCTGCTAAGACATATGTCAATGCAGTTCAAGGTTATGTGGATGTTAAGGATGTTGCTAAAGCTCATCTTTTAGTTTATGAAACTCCTTCAGCCTCAGGCAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTGCCAAGTTCTTCCCTGAATATCCTATTCCCACCAAGTGCTCTGATGAGGTGAATCCCAAGAAGAAACCTTACAAATACACTGTTGAGAAGCTCAAGTCATTGGGAATGGAATTCACACCAATCAAACAATGCATATATGAAACTGTGAGGAGTTTGCAAGAGAAGGGTCATCTTCCACTTCCCTCCCAACTTCCACAATGA 1404 43.59 MGSQVSLLVPICGAGRLLASVYHLTRIEYGIDQPEEVCIKVFATRINPRIPSVFWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLPAKAPLVFVHPYLSQLFKLFTHFSQSLFHFKSQNKTNPFRISTMPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNADDPKNAHLMDLQGAKDRLSLFSADLLDFDSLKAAIMGCDGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEAKVRRVVFTSSIGTVYMNPNRSPDTVVDESCWSDLDFCKNTKNWYCYAKTIAEQTAWELAEERGVDLVVINPMLVLGPLLQAGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHRGELVDILAKFFPEYPIPTKCSDEVNPKKKPYKYTVEKLKSLGMEFTPIKQCIYETVRSLQEKGHLPLPSQLPQ 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6419558 6422455 - Maker00038866 Lcy12g0526 648589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0526 467 SUPERFAMILY Nqo5-like 15 102 IPR037232 -
Lcy12g0526 467 Pfam Respiratory-chain NADH dehydrogenase, 30 Kd subunit 17 99 IPR001268 GO:0008137(InterPro)
Lcy12g0526 467 CDD FR_SDR_e 151 436 - -
Lcy12g0526 467 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 150 451 IPR050425 GO:0016616(PANTHER)
Lcy12g0526 467 Pfam NAD dependent epimerase/dehydratase family 151 382 IPR001509 -
Lcy12g0526 467 FunFam Cinnamoyl-CoA reductase 1 142 467 - -
Lcy12g0526 467 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 143 454 IPR036291 -
Lcy12g0526 467 ProSitePatterns Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 64 85 IPR020396 GO:0016651(InterPro)
Lcy12g0526 467 Gene3D - 141 467 - -
Lcy12g0526 467 Gene3D NADH:ubiquinone oxidoreductase, 30kDa subunit 5 83 IPR037232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0524 Lcy-Chr12:6400152 Lcy12g0526 Lcy-Chr12:6419558 7.85E-229 dispersed
Lcy12g0526 Lcy-Chr12:6419558 Lcy3g1996 Lcy-Chr3:47089779 6.58E-185 dispersed
Lcy12g0525 Lcy-Chr12:6410857 Lcy12g0526 Lcy-Chr12:6419558 5.81E-231 tandem
Lcy12g0526 Lcy-Chr12:6419558 Lcy12g0527 Lcy-Chr12:6431949 2.85E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0526 K09753 - csv:116401668 603.208