Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g0527 | ATGCCCCTCGCCGCCGCCGCCGCCGCCACCGCCGCCGTGGCTTCCGGCAAAACTGTTTGTGTCACCGGCGCCGGTGGCTTCATTGCCTCTTGGCTTGTGAAGCTCCTCCTCCAAAAGGGTTACACTGTACGAGGCACTGTTAGAAACCCAGATGATCAGAAGAATGCTCATTTGAAAGAGTTGGGTGGAGCTAAGGAAAGGCTTACGTTGTACGGTGCTGATCTTCTTAATTTTGAGAGCCTCAAAGCCGCCATTATCGGTTGTGACGGTGTTTTCCACACCGCGTCTCCGGTGACCGATGATCCAGAAAAGGTGGAGCAAGCAATAATCGGGACGAAGAACGTCATAATGGCAGCGGCGGAGGCCACGGTCCGACGGGTGGTTTTCACATCATCGATCGGAACTGTATACATGAACCCTAATCGGAACCCTGACATGGTAGTAGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAAAGCACAAAGAACTGGTATTGCTATGCAAAAACAATGGCAGAACAAACAGCATGGGCAATGGCAGAGGAGAAAGGGGTGGATCTAGTGGTGGTGAATCCAATGTTGGTGCTTGGACCTTTATTACAAGACACAATAAATGCAAGTGTTGATCATATAATGAAGTACTTGACAGGATCTGTGAAGACATATGTGAATGCAGTACAAGGTTATGTTCATGTTAAGGATGTTGCTAAAGCTCACTTGTTACTGTTCGAAACTCCCTCTGCTTTTGGTAGATACATTTGTGCTGAAACTATGCTTCATCGTGGAGAATTGGTTCAGATTTTGGCTAAGTTCTTCCCTGAGTATCCCATTCCTACCAAGTAA | 846 | 47.64 | MPLAAAAAATAAVASGKTVCVTGAGGFIASWLVKLLLQKGYTVRGTVRNPDDQKNAHLKELGGAKERLTLYGADLLNFESLKAAIIGCDGVFHTASPVTDDPEKVEQAIIGTKNVIMAAAEATVRRVVFTSSIGTVYMNPNRNPDMVVDESCWSDLDFCKSTKNWYCYAKTMAEQTAWAMAEEKGVDLVVVNPMLVLGPLLQDTINASVDHIMKYLTGSVKTYVNAVQGYVHVKDVAKAHLLLFETPSAFGRYICAETMLHRGELVQILAKFFPEYPIPTK | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 6431949 | 6435664 | - | Maker00038693 | Lcy12g0527 | 648590 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g0527 | 281 | Gene3D | - | 8 | 281 | - | - | |
| Lcy12g0527 | 281 | Pfam | NAD dependent epimerase/dehydratase family | 19 | 249 | IPR001509 | - | |
| Lcy12g0527 | 281 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 15 | 280 | IPR036291 | - | |
| Lcy12g0527 | 281 | CDD | FR_SDR_e | 19 | 281 | - | - | |
| Lcy12g0527 | 281 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 18 | 274 | IPR050425 | GO:0016616(PANTHER) | |
| Lcy12g0527 | 281 | FunFam | Cinnamoyl-CoA reductase 1 | 12 | 281 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0527 | Lcy-Chr12:6431949 | Lcy3g1996 | Lcy-Chr3:47089779 | 1.53E-154 | dispersed | |
| Lcy12g0526 | Lcy-Chr12:6419558 | Lcy12g0527 | Lcy-Chr12:6431949 | 2.85E-165 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g0527 | K09753 | - | csv:101219069 | 497.664 |