Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0531 ATGGACACCGAAGAAGCTCCGTCGACACCGGTGACGCCGGGGACGCCCGGAGCTCCGCTTTTTGGAGGACACAAGGGAAATCACCATGGAAGTGAAAATGGTAAAAGATCTCTTCTCAAAAGTTGCATCTCCTTCAATGTTGATGATTGGGGCACTGATGAAGGAGGCTTAGCTAAAGTCTCTTGTTCATTGCCACCCCCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCGGAGTTCATTGGCACTCTAATGCTCATCTTTGCTGGAACTGCCACTGCCATTGTGAACCAAAAGACACAAGGAACCGAAACGCTCATCGGCCTGGCGGCCTCTACTGGTCTTGCAGTGATGATCGTCATCTTGTCGACCGGCCACATCTCCGGAGCCCATCTGAACCCCGCGATCACCATCGCTTTTGCTGCCTTGAAGCACTTTCCATGGAAGAATGTGCCAGTGTATATTGGAGCTCAAATGTTGGCTTCTCTATGTGCTTCATTTGCATTGAAATGGATCTTTGATCCCACAATGGGGGGAGGAGTGACTGTTCCTTCATGTGGATATGCCCAAGCTTTTGCTCTTGAGTTCATCATTAGCTTCAACCTCATGTTTGTCATCACCGCGGTGGCCACCGACACTCGGGCTGTGGGAGAGTTGGCGGGAATCGCGGTGGGAGCAACAGTCATGCTCAATGTACTCATCGCCGGACAAACAACAGGAGCTTCAATGAATCCAGTGAGAACATTGGGACCAGCCATTGCTGCAAACAACTTTAGAGCCATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCTGACGAGGATGGCGATGCACGTACCGCAAGAAGCTTTCGAAGATGA 897 50.61 MDTEEAPSTPVTPGTPGAPLFGGHKGNHHGSENGKRSLLKSCISFNVDDWGTDEGGLAKVSCSLPPPPVSLARKVGAEFIGTLMLIFAGTATAIVNQKTQGTETLIGLAASTGLAVMIVILSTGHISGAHLNPAITIAFAALKHFPWKNVPVYIGAQMLASLCASFALKWIFDPTMGGGVTVPSCGYAQAFALEFIISFNLMFVITAVATDTRAVGELAGIAVGATVMLNVLIAGQTTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDEDGDARTARSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6490586 6495920 + Maker00038957 Lcy12g0531 648594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0531 298 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0531 298 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0531 298 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0531 298 PRINTS Major intrinsic protein family signature 193 211 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0531 298 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0531 298 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0531 298 PANTHER AQUAPORIN NIP2-1 69 286 IPR034294 -
Lcy12g0531 298 MobiDBLite consensus disorder prediction 1 33 - -
Lcy12g0531 298 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Lcy12g0531 298 Pfam Major intrinsic protein 70 278 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g0531 298 Gene3D Glycerol uptake facilitator protein. 66 290 IPR023271 -
Lcy12g0531 298 FunFam Aquaporin NIP2-1 61 293 - -
Lcy12g0531 298 SUPERFAMILY Aquaporin-like 70 287 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0531 Lcy-Chr12:6490586 Lcy12g1447 Lcy-Chr12:32957403 4.16E-110 dispersed
Lcy12g0531 Lcy-Chr12:6490586 Lcy12g1446 Lcy-Chr12:32924441 1.11E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0531 K09874 - csv:101207376 523.472