Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0533 ATGGATCTTCCCATATCAGAGCCATCTCCTTCTGAAACTTCGACGATCATCTCTGCTTCAGAGTCTTCTCCGCCATGTCCAAAAGGGGATCGAACAGCAGACCAAACTAACCCAAATTCCCAACTGGGTTTCCATCTAAGCCTCTCTAACAACGATTCCGATCATGGGTCGAACCCGGAACTCAATTTGATCGACTGTTTCGATGCGAATTTGGAAACAGAGCCCACGGACACCGAAACAGAGCCGAGGGTTTTCTCTTGCAACTATTGCCAGAGGAAATTTTACAGTTCACAGGCGCTTGGGGGCCATCAAAATGCTCACAAGCGCGAGAGGACTTTGGCAAAGAGGACTCAGCGGGTCGGGTCGGGCTCTAATTTCGGGCTCGCTCATCGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTTAGTAGGTCGCTTGGAATTCAGGCTCATTCCATGGTTCATAAGCCTTCTTTTCACGTTTCTGCAATTGGGTCGTCGGGGATTTACGGCCACAGTGGCTGGTCACGGCAGCCGCTCGATCAGCAGCCGGCGATTGGCCGGCTGCTGCAGGGGAATTCCCACGTCGGAAGCCTCAGAGGCATTTCGTCGAACACTGGAGCTGCAAGGTTTGAGGGTGTGAAAAAATTCTCTACGACAGAGCCGCCTCCGCCGCTGGGAGGGTTCTGGTGGGACAGCGGCGGCGGTGGCGGCGGTGGAGGCGGCGGCGGCGGTGGTGGTTTTAGTCATTTGAAGATGAAGCCTAAACAGGATGAGTTGTTGAAGCTTGACTTGTCTCTTAAGCTCTAA 816 53.19 MDLPISEPSPSETSTIISASESSPPCPKGDRTADQTNPNSQLGFHLSLSNNDSDHGSNPELNLIDCFDANLETEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRVGSGSNFGLAHRYSSLASLPLHGSFSRSLGIQAHSMVHKPSFHVSAIGSSGIYGHSGWSRQPLDQQPAIGRLLQGNSHVGSLRGISSNTGAARFEGVKKFSTTEPPPPLGGFWWDSGGGGGGGGGGGGGGFSHLKMKPKQDELLKLDLSLKL 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6518986 6519801 + Maker00038500 Lcy12g0533 648596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0533 271 MobiDBLite consensus disorder prediction 29 55 - -
Lcy12g0533 271 MobiDBLite consensus disorder prediction 218 255 - -
Lcy12g0533 271 MobiDBLite consensus disorder prediction 7 22 - -
Lcy12g0533 271 FunFam Zinc finger protein 2 66 130 - -
Lcy12g0533 271 Gene3D Classic Zinc Finger 66 126 - -
Lcy12g0533 271 MobiDBLite consensus disorder prediction 1 55 - -
Lcy12g0533 271 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lcy12g0533 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Lcy12g0533 271 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Lcy12g0533 271 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 271 IPR044246 GO:0009788(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0283 Lcy-Chr12:3477862 Lcy12g0533 Lcy-Chr12:6518986 6.17E-26 dispersed
Lcy12g0533 Lcy-Chr12:6518986 Lcy7g1380 Lcy-Chr7:20870333 8.72E-29 dispersed
Lcy2g0275 Lcy-Chr2:2207910 Lcy12g0533 Lcy-Chr12:6518986 5.40E-17 transposed
Lcy7g0744 Lcy-Chr7:7172116 Lcy12g0533 Lcy-Chr12:6518986 7.61E-26 transposed
Lcy12g0533 Lcy-Chr12:6518986 Lcy13g1820 Lcy-Chr13:37165673 1.57E-37 wgd
Lcy12g0533 Lcy-Chr12:6518986 Lcy3g2000 Lcy-Chr3:47121354 2.75E-36 wgd
Lcy12g0533 Lcy-Chr12:6518986 Lcy9g1878 Lcy-Chr9:43804500 4.73E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19236 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0533 - - - 0.0