Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0538 ATGGCGAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGAACTTTCGAAACCGCCCAAGACGCCGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCTCTAACAATCTCCCAACCAATCACAACGCGCCACCTCACTCTTCATCGGCGCCGCCGCCGTCCAAGCTTCTAACTCCGACATTGATAGACAAGTTGCAGAGATGTCGAATGGCTTCTCTCCAAATGGCCAAAAAGCAAATCCCCACCAAAACCAACTTCGCCGACCGCAAATCCACCGACCCAAGTCGCCGTCAGGCCACCAAACTCGACGGCGGAAGCGGCGGTCTCTGGCAGGAGACGGACGGCAAATGGGTCGCCGGCGGAGAGGCTCAGGAGGTCGGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGCTCCTTTGAATTTTGCCCTAATAATAATAATATTGGTTCTATAAATAATTAG 555 53.15 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAQDAARAYDEAARIMCCSNNLPTNHNAPPHSSSAPPPSKLLTPTLIDKLQRCRMASLQMAKKQIPTKTNFADRKSTDPSRRQATKLDGGSGGLWQETDGKWVAGGEAQEVGRLEDDHVEQMIQELLDLGSFEFCPNNNNIGSINN 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6576075 6577486 + Maker00038886 Lcy12g0538 648601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0538 184 FunFam Ethylene-responsive transcription factor 2 6 64 - -
Lcy12g0538 184 SMART rav1_2 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0538 184 CDD AP2 6 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0538 184 MobiDBLite consensus disorder prediction 107 136 - -
Lcy12g0538 184 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0538 184 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 112 IPR050913 -
Lcy12g0538 184 Pfam AP2 domain 7 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0538 184 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0538 184 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0538 184 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g0538 184 SUPERFAMILY DNA-binding domain 7 55 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0538 Lcy-Chr12:6576075 Lcy13g1817 Lcy-Chr13:37127558 7.10E-46 dispersed
Lcy12g0538 Lcy-Chr12:6576075 Lcy13g1816 Lcy-Chr13:37121738 1.95E-46 wgd
Lcy12g0538 Lcy-Chr12:6576075 Lcy3g2003 Lcy-Chr3:47149230 1.52E-49 wgd
Lcy12g0538 Lcy-Chr12:6576075 Lcy9g1874 Lcy-Chr9:43776258 1.69E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19237 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0538 - - - 0.0