Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0539 ATGACCGACATCAGCTTGGAGGAGATCAAGAATGAGAACATCGATCTCGAGCGCATACCAGTCGAGGAAGTCTTTGAACAACTGAAATGCTCCCGAGAAGGTTTGTCCTCAGAGGAGGGGCGCAAGAGGCTGCAACTCTTTGGCCCGAATAAGCTTGAAGAGAAAAAGGAAAGTAAATTTCTCAAGTTTCTGGGTTTTATGTGGAATCCTCTTTCATGGGTTATGGAAGCTGCGGCTATCATGGCCATAGTTCTTGCCAATGGAGGGGGGCAACCACCGGATTGGCAAGATTTTGTGGGAATTACGGCATTGCTTATTATCAATTCCACAATCAGCTTTATAGAGGAAAACAATGCAGGCAATGCTGCAGCTGCACTTATGGCGGGACTTGCACCAAAAACCAAGCAAGGTGAGATCGAGGCTGTTGTAATTGCCACTGGTGTTCACACCTTCTTTGGAAAGGCTGCTCACTTGGTTGATAGCACAAATCAAGTTGGGCACTTCCAAAAGATTATTGAGCTTTGTGACCTCCGAGATGATATAAAGAAGAAGGCTCATTCAATCATTGACAAATTCGCCGATCGTGGTCTTCGTTCTCTTGCTGTTTGCAGACAGACCGTTCCAGAAAAAACCAAAGAAAGTGCTGGCGGAGCATGGCAATTTGTTGGTCTCTTGCCTCTCTTTGATCCTCCAAGGCATGACAGTGCAGAGACAATCCGAAGAGCACTTAATCTTGGTGTCAACGTTAAGATGATCACCGGTGACCAACTGGCCATTGGGAAGGAAACTGGTCGCAGGCTTGGAATGGGCACAAACATGTATCCATCTTCCTCACTCCTTGGACAAAGCAAGGACGAGTCGATTGCTTCTTTACCTGTTGATGAGCTTATTGAGAAGGCTGATGGATTTGCAGGCGTCTTCCCTGAGCACAAATACGAAATTGTGAGGAGACTTCAAGAGAGGAAGCATATATGTGGGATGACAGGAGATGGTGTGAATGATGCCCCAGCATTGAAGAAGGCAGACATAGGAATTGCAGTTGCTGATGCAACTGATGCTGCAAGAAGTGCTTCTGATATAGTCCTGACAGAGCCAGGACTGAGCGTGATTGTCAGTGCTGTTTTAACAAGCAGAGCCATTTTCCAGAGAATGAAGAACTACACCATCTACGCTGTTTCAATAACCATCCGTATTGTCTTGGGCTTCATGCTTATTGCACTCATTTGGAAATTTGACTTCTCCCCATTCATGGTTCTCATCATAGCCATTCTCAATGATGGCACCATCATGACCATCTCTAAAGACAGAGTAAAACCCTCTCCTCTTCCTGATTCATGGAAGCTCCGCGAGATCTTCGCAACCGGCGTCGTTTTGGGCTCATACTTGGCTGTTATGACTGTTGTTTTCTTCTGGGTCGCTAACACTACCGATTTCTTTTCGGACAAATTTGGTGTACGTTCTATCAGAGGAAATACTGATGAGCTCACTGCAGCTGTGTACCTTCAAGTCAGCACTGTCAGTCAGGCACTCATCTTTGTCACAAGATCTCGAAGCTGGTCATTTATTGAACGCCCTGGTCTACTCCTCGTGTTTGCTTTCTTGGTAGCACAGCTGGTGGCTACCCTGATTGCTGTGTATGCGAACTGGGCATTTGCTGATATGAAAGGGATTGGATGGGGATGGGCAGGAGTGATTTGGATCTATAGCATAATCTTCTACATTCCTCTGGACATTCTCAAGTTCGCCACTCGATATGCATTGAGCGGCAAGGCTTGGGACAATATACTCCAAAACAAGACTGCCTTCACATCAAAGAAAGATTATGGCATTGGCGAGAGGGAGGCTCAATGGGCTGCAGCTCAACGTACACTCCACGGCCTGCAGCCTCCCGAAGCATCAGAGCTCTTCAATGACAAAAGCAATTACAGGGAGTTGTCCGAAATCGCCGAGCAAGCCAAGAAGCGTGCTGAAGTCGCCAGGTTGAGGGAGCTGCATACATTGAAGGGGCATGTTGAATCAGTGGTGAAACTAAAGGGACTGGACATTGAAACGATCCAACAACACTACACTGTTTGA 2076 46.68 MTDISLEEIKNENIDLERIPVEEVFEQLKCSREGLSSEEGRKRLQLFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGITALLIINSTISFIEENNAGNAAAALMAGLAPKTKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKIIELCDLRDDIKKKAHSIIDKFADRGLRSLAVCRQTVPEKTKESAGGAWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASLPVDELIEKADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLAVMTVVFFWVANTTDFFSDKFGVRSIRGNTDELTAAVYLQVSTVSQALIFVTRSRSWSFIERPGLLLVFAFLVAQLVATLIAVYANWAFADMKGIGWGWAGVIWIYSIIFYIPLDILKFATRYALSGKAWDNILQNKTAFTSKKDYGIGEREAQWAAAQRTLHGLQPPEASELFNDKSNYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6595148 6600136 + Maker00038718 Lcy12g0539 648602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0539 691 PRINTS P-type cation-transporting ATPase superfamily signature 223 234 - -
Lcy12g0539 691 PRINTS P-type cation-transporting ATPase superfamily signature 351 363 - -
Lcy12g0539 691 PRINTS P-type cation-transporting ATPase superfamily signature 245 255 - -
Lcy12g0539 691 PRINTS P-type cation-transporting ATPase superfamily signature 328 347 - -
Lcy12g0539 691 Gene3D - 330 586 - -
Lcy12g0539 691 Gene3D - 66 138 - -
Lcy12g0539 691 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Lcy12g0539 691 SUPERFAMILY HAD-like 220 374 IPR036412 -
Lcy12g0539 691 FunFam ATPase 4 plasma membrane-type 312 555 - -
Lcy12g0539 691 PANTHER CALCIUM-TRANSPORTING ATPASE 170 614 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy12g0539 691 NCBIfam HAD-IC family P-type ATPase 303 416 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy12g0539 691 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 587 IPR023298 -
Lcy12g0539 691 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Lcy12g0539 691 Pfam haloacid dehalogenase-like hydrolase 206 342 - -
Lcy12g0539 691 Coils Coil 642 662 - -
Lcy12g0539 691 Gene3D - 165 228 IPR023299 GO:0000166(InterPro)
Lcy12g0539 691 Gene3D - 640 691 - -
Lcy12g0539 691 FunFam Membrane H(+)-ATPase1 168 228 - -
Lcy12g0539 691 FunFam Plasma membrane ATPase 221 376 - -
Lcy12g0539 691 PRINTS H+-transporting ATPase (proton pump) signature 500 521 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy12g0539 691 PRINTS H+-transporting ATPase (proton pump) signature 185 203 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy12g0539 691 PRINTS H+-transporting ATPase (proton pump) signature 300 316 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy12g0539 691 PRINTS H+-transporting ATPase (proton pump) signature 328 344 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy12g0539 691 PRINTS H+-transporting ATPase (proton pump) signature 359 384 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1984 Lcy-Chr10:43942630 Lcy12g0539 Lcy-Chr12:6595148 0 dispersed
Lcy12g0539 Lcy-Chr12:6595148 Lcy2g0155 Lcy-Chr2:1218747 0 dispersed
Lcy12g0539 Lcy-Chr12:6595148 Lcy2g0298 Lcy-Chr2:2384611 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0539 K01535 - csv:101212751 966.452