Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0548 ATGCCGAAGCTGGTTTTGAAAGGGGGAAGTAGGCCGCCATGGGTGGGCTTGGCTGCTGCTGTTTGGGTTCAAATAGCTGCTGGTTCTTCTTATAACTTTTCTCTTTACTCACACTTGCTTAAATCTGTTCTGGGTTTGAATCAGCAGCAGCTGACTGTGCTGGGAGTGGCTAATGACATTGGGGAGAGTGTTGGTTTGCTTCCTGGACTTGCTTGCAATAGATTTCCTCCATGGGCTGTGCTTTTGGTTGGCTCTCTGTGTTGCTTTGTGGGTTATGGGGCTATTTGGCTTGCTGTTAGCAGGACTGTTCCCAATCTGCCTTATTGGCTGCTATGGCTCACACATTGTATTGCTACAAATAGCAATGCATGGTTCGGAACAGCTGTGCTCGTAACCAACATGAGGAATTTCCCTCTCAGCAGAGGTACCGTTGCTGGCATTCTTAAAGGTTATGTCGGGCTTAGTGCTGCTGTATACACCGTGATATACAGCATGGTGCTCAAAAAGTCTGCTTTGGATTTACTGTTGTTTCTTGCGATCGGGATACCCATTTTGTGCTTAGCTTTGATGTACTTTGTTCGACCTTGTACTCCGGCTTCTTCAGAGGATCCGTCTGAGCGCGGTCATTTTCTTTTCACGCAAGCTGCTTGTGTCTTGCTAGCTGTTTTTCTAGTCTCGACCACAATTATAGATGCAACAACAACCCCTAGTGATGCCGTTGCATACACCTTAGTTGCCATAATGGCTATCCTTTTAATGTCTCCTCTTGCAGTTCCCATAAAAATGACCATTTGTTCTGCAAAAACGAAAAAACTCGGTCCTCGAGTTGACTCTGCAGAACCTTTGGCTTCTGGAGAAAGCGATTCTTCCCAAATAGAACCTTTATTGACACCATCTTCCTCAGCTACAAATCTTGGAAGTTTCTATGAGAATGATGATGCATCCGATGTAGAAACACTTCTTGCTGTGGGAGAGGGGGCGATTCATAAGAAGAGGAGAAGACCTAAAAGAGGTGAAGATTTCAAGCTCCGTGAAGCCGTAATCAAAGCTGATTTTTGGCTGCTTTGGTTCTTGTACTTCCTCGGGGTCGGTCCGGGAATAACGGTCCTCAACAATTTGTCTCAAATTGGGATTTCATTAGGTGTTAATGACACAACATTGCTGTTGGCTCTTTTCAGCTTCTGCAATTTTATTGGTCGTCTAGGCTCCGGTGTTATTTCCGAGCACTTCGTCAGTTGCTCCATTTACGAAATGCTCATCGGTTCGGCCATCGTTGTTCAATGCAGGTCAAGAATGATACCTCGCTCGCTATGGATGATGTTTGCACTAATACTCATGTCCATAGCATTCCTCCTCTATGCATCCGCCCTCACGAGTACTCTCTACCTCGCCACTGGTTTCACTGGAATCAGCTACGGAGTTCTATATTCTATGATGGTCCCTCTCGCATCCGAGATTTTCGGCCTCAAGAATTTTGGGGTAATCTTCAACTTCATGCAGCTGGGGAATCCAATAGGAGCAGTCCTTTTCTCCGTTCTACTCGCCAGTACTTTATACGACAATGAAGCTGCTAAGCAAGGTTCGATAACCTGCATAGGCCAACAGTGCTTCAGGGTTACTTTCTTCGTTCTTTCGGGTGTTGCCGGGTTAGGTTCGATCTTGAGCATAATTCTGACTGTTAGATTAAGGCCAGTTTATCAAATGCTTTACGCCGGTGGCTCATTCCGCTTGCCTCAAAGTTCAGGTCATTGA 1752 45.78 MPKLVLKGGSRPPWVGLAAAVWVQIAAGSSYNFSLYSHLLKSVLGLNQQQLTVLGVANDIGESVGLLPGLACNRFPPWAVLLVGSLCCFVGYGAIWLAVSRTVPNLPYWLLWLTHCIATNSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTVIYSMVLKKSALDLLLFLAIGIPILCLALMYFVRPCTPASSEDPSERGHFLFTQAACVLLAVFLVSTTIIDATTTPSDAVAYTLVAIMAILLMSPLAVPIKMTICSAKTKKLGPRVDSAEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDASDVETLLAVGEGAIHKKRRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLSQIGISLGVNDTTLLLALFSFCNFIGRLGSGVISEHFVSCSIYEMLIGSAIVVQCRSRMIPRSLWMMFALILMSIAFLLYASALTSTLYLATGFTGISYGVLYSMMVPLASEIFGLKNFGVIFNFMQLGNPIGAVLFSVLLASTLYDNEAAKQGSITCIGQQCFRVTFFVLSGVAGLGSILSIILTVRLRPVYQMLYAGGSFRLPQSSGH 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6673485 6677621 + Maker00038508 Lcy12g0548 648611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0548 583 SUPERFAMILY MFS general substrate transporter 11 199 IPR036259 -
Lcy12g0548 583 MobiDBLite consensus disorder prediction 276 297 - -
Lcy12g0548 583 SUPERFAMILY MFS general substrate transporter 333 564 IPR036259 -
Lcy12g0548 583 CDD MFS_Mch1p_like 12 551 - -
Lcy12g0548 583 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 13 566 - GO:0016020(PANTHER)
Lcy12g0548 583 Pfam Nodulin-like 13 260 IPR010658 -
Lcy12g0548 583 Gene3D MFS general substrate transporter like domains 8 276 IPR036259 -
Lcy12g0548 583 MobiDBLite consensus disorder prediction 283 297 - -
Lcy12g0548 583 Gene3D MFS general substrate transporter like domains 347 566 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2287 Lcy-Chr10:46524240 Lcy12g0548 Lcy-Chr12:6673485 1.37E-97 dispersed
Lcy12g0548 Lcy-Chr12:6673485 Lcy2g0605 Lcy-Chr2:5176176 4.54E-78 dispersed
Lcy12g0548 Lcy-Chr12:6673485 Lcy8g1243 Lcy-Chr8:38966669 4.03E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0548 - - - 0.0