Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0562 ATGGCCTTTTGCCCGATGTTTTGCTGTGGAATTGGTTCGGATCGGAAAGAAAGAGGGAAAAAACAGCAAACATGGAGGGTCTTTTCATTGAAGGAATTACACTCAGCTACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGTGTTTACTGGGGTCAGCTGTGGGATGGATCACAAATTGCGGTTAAGAGGTTGAAGGTTTGGAGCAATAAAGCAGACATGGAGTTTTCTGTGGAAGTTGAGATACTGGCCCGAGTTAGGCACAAGAATCTATTGAGTTTACGTGGCTACTGTGCTGAAGGGCAAGAGCGTTTGATCGTGTATGACTACATGCCGAATCTAAGTCTCCTCTCTCATCTACATGGACATCACTCATCAGAATGCCAACTCGATTGGAAACGCCGAATGAAAATCGCTATTGGGTCTGCCGAGGGAATTACCTATCTTCACCACCAAGCGACTCCACATATCATTCATCGAGACATCAAAGCTAGTAATGTTTTACTTGACCCAGATTTCCAAGCTCGTGTAGCTGACTTCGGATTCGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTCGCACCTGAATATGCTATGTTAGGGAAGGCATCAGAGAGTTGTGACGTATACAGCTTCGGCATTCTCCTTCTCGAGCTTGCCACCGGCAGGAAACCTCTTGAGAAGTTGAGTGCAACAATGAAACGCACAATCACAGACTGGGCGCTGCCAATGGTAGTAGAGAAGAAATTCGAAGAACTTGCAGACCCAAAGCTAAACGGAGACTACAATGCAGACGAGCTAAAGAGAGTCGTCCTTGTCGCACTCATTTGTTCGCATTCACGGCCCGAGAAACGACCGACCATGCTCGAGGTCGTGGAGCTGCTAAAAGGAGAATCAAAAGAGAAGCTAGCCAAGTTAGAAGATGATGAGCTGTTCAAGAGCCATCAAGTAGCTGCACAAACTACAGAAGTACCAGCTGGTGAAGATAGCTCAGATTTCATATCAGAAGAAAAGGATTCAAAAGAGGAGGTGAAAGAGAATTCAACACAAAACCCACATGGGAATAGTAGCTAA 1122 45.19 MAFCPMFCCGIGSDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECQLDWKRRMKIAIGSAEGITYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGRKPLEKLSATMKRTITDWALPMVVEKKFEELADPKLNGDYNADELKRVVLVALICSHSRPEKRPTMLEVVELLKGESKEKLAKLEDDELFKSHQVAAQTTEVPAGEDSSDFISEEKDSKEEVKENSTQNPHGNSS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6852684 6856418 - Maker00038603 Lcy12g0562 648625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0562 373 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0562 373 PANTHER OS01G0750732 PROTEIN 22 338 IPR050885 -
Lcy12g0562 373 CDD STKc_IRAK 46 313 - -
Lcy12g0562 373 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Lcy12g0562 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g0562 373 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Lcy12g0562 373 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524(InterPro)
Lcy12g0562 373 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0562 373 MobiDBLite consensus disorder prediction 332 373 - -
Lcy12g0562 373 SMART serkin_6 40 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0562 373 Coils Coil 305 325 - -
Lcy12g0562 373 MobiDBLite consensus disorder prediction 347 364 - -
Lcy12g0562 373 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Lcy12g0562 373 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Lcy12g0562 373 Gene3D Phosphorylase Kinase; domain 1 12 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0562 Lcy-Chr12:6852684 Lcy2g0241 Lcy-Chr2:1906555 1.72E-141 dispersed
Lcy1g0314 Lcy-Chr1:2779742 Lcy12g0562 Lcy-Chr12:6852684 4.24E-48 dispersed
Lcy5g2076 Lcy-Chr5:43878112 Lcy12g0562 Lcy-Chr12:6852684 7.15E-63 dispersed
Lcy12g0562 Lcy-Chr12:6852684 Lcy7g0396 Lcy-Chr7:3370972 1.80E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65495 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0562 - - - 0.0